Result of FASTA (ccds) for
pFN21AE2270
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2270, 146 aa
1>>>pF1KE2270 146 - 146 aa - 146 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2194+/-0.000539; mu= 13.2849+/- 0.033
mean_var=65.8325+/-12.911, 0's: 0 Z-trim(113.9): 20 B-trim: 0 in 0/50
Lambda= 0.158072
statistics sampled from 14475 (14495) to 14475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.445), width: 16
Scan time: 1.860
The best scores are: opt bits E(32554)
CCDS13158.1 CST3 gene_id:1471|Hs108|chr20 ( 146) 982 231.4 1.6e-61
CCDS13161.1 CST2 gene_id:1470|Hs108|chr20 ( 141) 542 131.0 2.4e-31
CCDS13159.1 CST4 gene_id:1472|Hs108|chr20 ( 141) 529 128.0 1.9e-30
CCDS13160.1 CST1 gene_id:1469|Hs108|chr20 ( 141) 523 126.7 4.9e-30
CCDS13162.1 CST5 gene_id:1473|Hs108|chr20 ( 142) 488 118.7 1.3e-27
CCDS8126.1 CST6 gene_id:1474|Hs108|chr11 ( 149) 282 71.7 1.8e-13
CCDS13156.1 CST8 gene_id:10047|Hs108|chr20 ( 142) 260 66.7 5.6e-12
CCDS13165.2 CST7 gene_id:8530|Hs108|chr20 ( 145) 254 65.3 1.5e-11
>>CCDS13158.1 CST3 gene_id:1471|Hs108|chr20 (146 aa)
initn: 982 init1: 982 opt: 982 Z-score: 1218.2 bits: 231.4 E(32554): 1.6e-61
Smith-Waterman score: 982; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)
10 20 30 40 50 60
pF1KE2 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRK
70 80 90 100 110 120
130 140
pF1KE2 AFCSFQIYAVPWQGTMTLSKSTCQDA
::::::::::::::::::::::::::
CCDS13 AFCSFQIYAVPWQGTMTLSKSTCQDA
130 140
>>CCDS13161.1 CST2 gene_id:1470|Hs108|chr20 (141 aa)
initn: 584 init1: 490 opt: 542 Z-score: 676.1 bits: 131.0 E(32554): 2.4e-31
Smith-Waterman score: 542; 56.5% identity (79.6% similar) in 147 aa overlap (1-146:1-141)
10 20 30 40 50
pF1KE2 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLV-GGPMDASVEEEGVRRALDFAVGE
:: :: . ::::: ::::: :: . :.. :: .::....: :.::: :...:
CCDS13 MAWPLCTLLLLLATQAVALAWSPQ------EEDRIIEGGIYDADLNDERVQRALHFVISE
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 YNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR
::::..: :. : :.:.:::.:::.:::::.:.:.::: :::.:::::.: ::.::.:..
CCDS13 YNKATEDEYYRRLLRVLRAREQIVGGVNYFFDIEVGRTICTKSQPNLDTCAFHEQPELQK
60 70 80 90 100 110
120 130 140
pF1KE2 KAFCSFQIYAVPWQGTMTLSKSTCQDA
: .:::::: :::. :.: .: ::.:
CCDS13 KQLCSFQIYEVPWEDRMSLVNSRCQEA
120 130 140
>>CCDS13159.1 CST4 gene_id:1472|Hs108|chr20 (141 aa)
initn: 583 init1: 486 opt: 529 Z-score: 660.1 bits: 128.0 E(32554): 1.9e-30
Smith-Waterman score: 529; 55.8% identity (78.2% similar) in 147 aa overlap (1-146:1-141)
10 20 30 40 50
pF1KE2 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLV-GGPMDASVEEEGVRRALDFAVGE
:: :: . :::.: :: ::: :: . :.. :: .::....: :.::: ::..:
CCDS13 MARPLCTLLLLMATLAGALA------SSSKEENRIIPGGIYDADLNDEWVQRALHFAISE
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 YNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR
::::..: :. : :::.:::.: .:::::.:::.::: :::.:::::.: ::.::.:..
CCDS13 YNKATEDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQK
60 70 80 90 100 110
120 130 140
pF1KE2 KAFCSFQIYAVPWQGTMTLSKSTCQDA
: .:::.:: :::. :.: .: ::.:
CCDS13 KQLCSFEIYEVPWEDRMSLVNSRCQEA
120 130 140
>>CCDS13160.1 CST1 gene_id:1469|Hs108|chr20 (141 aa)
initn: 573 init1: 473 opt: 523 Z-score: 652.7 bits: 126.7 E(32554): 4.9e-30
Smith-Waterman score: 523; 55.1% identity (78.9% similar) in 147 aa overlap (1-146:1-141)
10 20 30 40 50
pF1KE2 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLV-GGPMDASVEEEGVRRALDFAVGE
:: : . ::::: :::::: :: . :.. :: ..:....: :.::: ::..:
CCDS13 MAQYLSTLLLLLATLAVALAWSPK------EEDRIIPGGIYNADLNDEWVQRALHFAISE
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 YNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR
::::..: :. : :.:.:::.: :.:::::.:::.::: :::.:::::.: ::.::.:..
CCDS13 YNKATKDDYYRRPLRVLRARQQTVGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQK
60 70 80 90 100 110
120 130 140
pF1KE2 KAFCSFQIYAVPWQGTMTLSKSTCQDA
: .:::.:: :::.. .: :: ::..
CCDS13 KQLCSFEIYEVPWENRRSLVKSRCQES
120 130 140
>>CCDS13162.1 CST5 gene_id:1473|Hs108|chr20 (142 aa)
initn: 482 init1: 334 opt: 488 Z-score: 609.5 bits: 118.7 E(32554): 1.3e-27
Smith-Waterman score: 488; 51.0% identity (78.6% similar) in 145 aa overlap (1-144:1-140)
10 20 30 40 50 60
pF1KE2 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEY
: :...:::::. : ::.: ::. .. :.:: .......:. :::::..::
CCDS13 MMWPMHTPLLLLTALMVAVA-----GSASAQSRTLAGGIHATDLNDKSVQCALDFAISEY
10 20 30 40 50
70 80 90 100 110
pF1KE2 NKASN-DMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR
::. : : :.:: :::. : .:::.::::...:..:::::::.:::::::::.:::.::.
CCDS13 NKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKE
60 70 80 90 100 110
120 130 140
pF1KE2 KAFCSFQIYAVPWQGTMTLSKSTCQDA
. :::::: :::. ... . :.
CCDS13 EEFCSFQINEVPWEDKISILNYKCRKV
120 130 140
>>CCDS8126.1 CST6 gene_id:1474|Hs108|chr11 (149 aa)
initn: 251 init1: 193 opt: 282 Z-score: 355.3 bits: 71.7 E(32554): 1.8e-13
Smith-Waterman score: 282; 36.4% identity (65.0% similar) in 143 aa overlap (8-143:7-146)
10 20 30 40 50
pF1KE2 MAGPLRAPLLL-LAILAVALAVSPA-AGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVG
:: : ::..: : . : : . : . :.:: : : .. :..: . ::.
CCDS81 MARSNLPLALGLALVAFCLLALPRDARARPQE--RMVGELRDLSPDDPQVQKAAQAAVA
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 EYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQP-----NLDNCPFHD
:: .::..:. : ....:..:.:::..::: .:.: : : ::. .: .::.
CCDS81 SYNMGSNSIYYFRDTHIIKAQSQLVAGIKYFLTMEMGSTDCRKTRVTGDHVDLTTCPLAA
60 70 80 90 100 110
120 130 140
pF1KE2 QPHLKRKAFCSFQIYAVPWQGTMTLSKSTCQDA
. ..: :.:.. .::::.. : : .:
CCDS81 GAQ-QEKLRCDFEVLVVPWQNSSQLLKHNCVQM
120 130 140
>>CCDS13156.1 CST8 gene_id:10047|Hs108|chr20 (142 aa)
initn: 239 init1: 239 opt: 260 Z-score: 328.5 bits: 66.7 E(32554): 5.6e-12
Smith-Waterman score: 260; 34.0% identity (66.0% similar) in 144 aa overlap (6-146:3-142)
10 20 30 40 50
pF1KE2 MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVG---GPMDASVEEEGVRRALDFAV
: : : .:.. ::. .: ..: : : :..:: . .:.. : ::.
CCDS13 MPRCRWLSLILLTIPLAL--VARKDPKKNETGVLRKLKPVNAS--NANVKQCLWFAM
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 GEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHL
:::: :.: : ......:. :.. ..:..:::..:. : : . . : .... .:
CCDS13 QEYNKESEDKYVFLVVKTLQAQLQVTNLLEYLIDVEIARSDCRKPLSTNEICAIQENSKL
60 70 80 90 100 110
120 130 140
pF1KE2 KRKAFCSFQIYAVPWQGTMTLSKSTCQDA
::: ::: . :.::.: .:. .. :.::
CCDS13 KRKLSCSFLVGALPWNGEFTVMEKKCEDA
120 130 140
>>CCDS13165.2 CST7 gene_id:8530|Hs108|chr20 (145 aa)
initn: 270 init1: 176 opt: 254 Z-score: 321.0 bits: 65.3 E(32554): 1.5e-11
Smith-Waterman score: 254; 35.6% identity (63.0% similar) in 135 aa overlap (5-132:1-133)
10 20 30 40 50
pF1KE2 MAGPLRAPLLLLAILAVALAVSPAAGSSPGK-----PPRLVGG-PMDASVEEEGVRRALD
.:: :::. :..: ..: :: :. : : .... :: .:
CCDS13 MRAAGTLLAF--CCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAAR
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 FAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQP-NLDNCPFHD
..: ..:. .:::. . ...:: ::: :..:.:.::.::::: :.: ::.: :.
CCDS13 YSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQT
60 70 80 90 100 110
120 130 140
pF1KE2 QPHLKRKAFCSFQIYAVPWQGTMTLSKSTCQDA
. ::. : ....:::
CCDS13 NHTLKQTLSCYSEVWVVPWLQHFEVPVLRCH
120 130 140
146 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:36:59 2016 done: Mon Nov 7 01:36:59 2016
Total Scan time: 1.860 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]