FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2263, 385 aa
  1>>>pF1KE2263 385 - 385 aa - 385 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8496+/-0.000348; mu= 4.7457+/- 0.022
 mean_var=134.3111+/-27.620, 0's: 0 Z-trim(117.4): 28  B-trim: 52 in 1/59
 Lambda= 0.110667
 statistics sampled from 29370 (29396) to 29370 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.345), width:  16
 Scan time:  8.920

The best scores are:                                      opt bits E(85289)
NP_001020280 (OMIM: 142230) hematopoietic progenit ( 385) 2458 403.8 3.6e-112
NP_001764 (OMIM: 142230) hematopoietic progenitor  ( 328) 2053 339.1 9.1e-93


>>NP_001020280 (OMIM: 142230) hematopoietic progenitor c  (385 aa)
 initn: 2458 init1: 2458 opt: 2458  Z-score: 2134.8  bits: 403.8 E(85289): 3.6e-112
Smith-Waterman score: 2458; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)

               10        20        30        40        50        60
pF1KE2 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ
              310       320       330       340       350       360

              370       380     
pF1KE2 ENGTGQATSRNGHSARQHVVADTEL
       :::::::::::::::::::::::::
NP_001 ENGTGQATSRNGHSARQHVVADTEL
              370       380     

>>NP_001764 (OMIM: 142230) hematopoietic progenitor cell  (328 aa)
 initn: 2047 init1: 2047 opt: 2053  Z-score: 1786.4  bits: 339.1 E(85289): 9.1e-93
Smith-Waterman score: 2053; 99.1% identity (99.4% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE2 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ
       ::::::::::::::::::::::::  .:                                
NP_001 LAVLGITGYFLMNRRSWSPTGERLELEP                                
              310       320                                        




385 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:30:13 2016 done: Sun Nov  6 20:30:14 2016
 Total Scan time:  8.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]