FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2263, 385 aa
  1>>>pF1KE2263 385 - 385 aa - 385 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4369+/-0.000856; mu= 6.7145+/- 0.051
 mean_var=113.7255+/-22.712, 0's: 0 Z-trim(109.7): 37  B-trim: 5 in 1/52
 Lambda= 0.120267
 statistics sampled from 11056 (11079) to 11056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.34), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS31011.1 CD34 gene_id:947|Hs108|chr1            ( 385) 2458 437.2 1.2e-122
CCDS31012.1 CD34 gene_id:947|Hs108|chr1            ( 328) 2053 366.9 1.5e-101


>>CCDS31011.1 CD34 gene_id:947|Hs108|chr1                 (385 aa)
 initn: 2458 init1: 2458 opt: 2458  Z-score: 2315.5  bits: 437.2 E(32554): 1.2e-122
Smith-Waterman score: 2458; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)

               10        20        30        40        50        60
pF1KE2 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ
              310       320       330       340       350       360

              370       380     
pF1KE2 ENGTGQATSRNGHSARQHVVADTEL
       :::::::::::::::::::::::::
CCDS31 ENGTGQATSRNGHSARQHVVADTEL
              370       380     

>>CCDS31012.1 CD34 gene_id:947|Hs108|chr1                 (328 aa)
 initn: 2047 init1: 2047 opt: 2053  Z-score: 1936.8  bits: 366.9 E(32554): 1.5e-101
Smith-Waterman score: 2053; 99.1% identity (99.4% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE2 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 REVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQ
       ::::::::::::::::::::::::  .:                                
CCDS31 LAVLGITGYFLMNRRSWSPTGERLELEP                                
              310       320                                        




385 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:30:12 2016 done: Sun Nov  6 20:30:13 2016
 Total Scan time:  3.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]