FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2253, 261 aa
  1>>>pF1KE2253 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3344+/-0.000964; mu= 5.2799+/- 0.058
 mean_var=107.8067+/-21.118, 0's: 0 Z-trim(107.3): 31  B-trim: 2 in 1/52
 Lambda= 0.123524
 statistics sampled from 9491 (9505) to 9491 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS3655.1 EMCN gene_id:51705|Hs108|chr4           ( 261) 1592 294.2 6.2e-80
CCDS54782.1 EMCN gene_id:51705|Hs108|chr4          ( 248)  792 151.6 4.9e-37


>>CCDS3655.1 EMCN gene_id:51705|Hs108|chr4                (261 aa)
 initn: 1592 init1: 1592 opt: 1592  Z-score: 1548.5  bits: 294.2 E(32554): 6.2e-80
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KE2 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
              190       200       210       220       230       240

              250       260 
pF1KE2 LTVKTISHESGEHSAQGKTKN
       :::::::::::::::::::::
CCDS36 LTVKTISHESGEHSAQGKTKN
              250       260 

>>CCDS54782.1 EMCN gene_id:51705|Hs108|chr4               (248 aa)
 initn: 780 init1: 780 opt: 792  Z-score: 778.4  bits: 151.6 E(32554): 4.9e-37
Smith-Waterman score: 1475; 94.6% identity (95.0% similar) in 261 aa overlap (1-261:1-248)

               10        20        30        40        50        60
pF1KE2 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
       :::::.             :::::::::::::::::::::::::::::::::::::::::
CCDS54 SSKPKS-------------SVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
                           130       140       150       160       

              190       200       210       220       230       240
pF1KE2 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
       170       180       190       200       210       220       

              250       260 
pF1KE2 LTVKTISHESGEHSAQGKTKN
       :::::::::::::::::::::
CCDS54 LTVKTISHESGEHSAQGKTKN
       230       240        




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:22:35 2016 done: Sun Nov  6 17:22:36 2016
 Total Scan time:  2.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]