FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2240, 80 aa
  1>>>pF1KE2240 80 - 80 aa - 80 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6313+/-0.000569; mu= 6.6855+/- 0.035
 mean_var=64.0585+/-12.599, 0's: 0 Z-trim(113.0): 7  B-trim: 0 in 0/51
 Lambda= 0.160245
 statistics sampled from 13680 (13682) to 13680 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.42), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS75499.1 CD24 gene_id:100133941|Hs108|chr6      (  80)  469 115.9 2.7e-27
CCDS78166.1 CD24 gene_id:100133941|Hs108|chr6      ( 129)  332 84.3 1.4e-17


>>CCDS75499.1 CD24 gene_id:100133941|Hs108|chr6           (80 aa)
 initn: 469 init1: 469 opt: 469  Z-score: 603.6  bits: 115.9 E(32554): 2.7e-27
Smith-Waterman score: 469; 98.8% identity (100.0% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKVAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS75 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKAAGG
               10        20        30        40        50        60

               70        80
pF1KE2 ALQSTASLFVVSLSLLHLYS
       ::::::::::::::::::::
CCDS75 ALQSTASLFVVSLSLLHLYS
               70        80

>>CCDS78166.1 CD24 gene_id:100133941|Hs108|chr6           (129 aa)
 initn: 332 init1: 332 opt: 332  Z-score: 429.0  bits: 84.3 E(32554): 1.4e-17
Smith-Waterman score: 332; 96.6% identity (100.0% similar) in 58 aa overlap (23-80:72-129)

                       10        20        30        40        50  
pF1KE2         MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTN
                                     .:::::::::::::::::::::::::::::
CCDS78 SAASRVYGCTAPARETGGWAWETLAGAGAKKIYSSETTTGTSSNSSQSTSNSGLAPNPTN
              50        60        70        80        90       100 

             60        70        80
pF1KE2 ATTKVAGGALQSTASLFVVSLSLLHLYS
       ::::.:::::::::::::::::::::::
CCDS78 ATTKAAGGALQSTASLFVVSLSLLHLYS
             110       120         




80 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:55:35 2016 done: Mon Nov  7 15:55:35 2016
 Total Scan time:  1.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]