FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2235, 102 aa
  1>>>pF1KE2235 102 - 102 aa - 102 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9831+/-0.000582; mu= 10.5874+/- 0.035
 mean_var=51.6200+/-10.013, 0's: 0 Z-trim(110.4): 6  B-trim: 0 in 0/54
 Lambda= 0.178511
 statistics sampled from 11562 (11564) to 11562 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.355), width:  16
 Scan time:  1.150

The best scores are:                                      opt bits E(32554)
CCDS2320.1 HSPE1 gene_id:3336|Hs108|chr2           ( 102)  656 176.0 3.7e-45
CCDS63079.1 MOB4 gene_id:100529241|Hs108|chr2      ( 261)  348 96.8 6.4e-21


>>CCDS2320.1 HSPE1 gene_id:3336|Hs108|chr2                (102 aa)
 initn: 656 init1: 656 opt: 656  Z-score: 924.3  bits: 176.0 E(32554): 3.7e-45
Smith-Waterman score: 656; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KE2 MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI
               10        20        30        40        50        60

               70        80        90       100  
pF1KE2 QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD
       ::::::::::::::::::::::::::::::::::::::::::
CCDS23 QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD
               70        80        90       100  

>>CCDS63079.1 MOB4 gene_id:100529241|Hs108|chr2           (261 aa)
 initn: 348 init1: 348 opt: 348  Z-score: 489.1  bits: 96.8 E(32554): 6.4e-21
Smith-Waterman score: 348; 100.0% identity (100.0% similar) in 56 aa overlap (1-56:1-56)

               10        20        30        40        50        60
pF1KE2 MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS63 MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKDFYN
               10        20        30        40        50        60

               70        80        90       100                    
pF1KE2 QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD                  
                                                                   
CCDS63 WPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGL
               70        80        90       100       110       120




102 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:41:13 2016 done: Sun Nov  6 22:41:13 2016
 Total Scan time:  1.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]