Result of FASTA (omim) for
pFN21AE2234
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2234, 263 aa
1>>>pF1KE2234 263 - 263 aa - 263 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7327+/-0.000356; mu= 12.8824+/- 0.022
mean_var=86.8240+/-18.106, 0's: 0 Z-trim(116.3): 126 B-trim: 229 in 2/52
Lambda= 0.137643
statistics sampled from 27197 (27338) to 27197 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.321), width: 16
Scan time: 6.010
The best scores are: opt bits E(85289)
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 1824 371.9 6.8e-103
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 286 66.5 6.1e-11
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 286 66.5 6.1e-11
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 281 65.4 1.2e-10
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 281 65.5 1.2e-10
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 280 65.3 1.4e-10
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 278 64.9 1.8e-10
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 277 64.7 2e-10
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 276 64.5 2.4e-10
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 275 64.3 2.7e-10
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 273 63.9 3.6e-10
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 268 62.9 6.8e-10
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 271 63.6 6.8e-10
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 266 62.5 9.2e-10
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 265 62.3 1e-09
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 263 61.9 1.4e-09
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 261 61.5 1.9e-09
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 260 61.3 2.1e-09
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 258 60.8 2.5e-09
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 260 61.4 2.6e-09
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 258 60.9 3.3e-09
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 258 61.0 3.4e-09
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 258 61.0 3.8e-09
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 257 60.8 3.9e-09
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 256 60.5 4e-09
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 258 61.0 4e-09
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 258 61.0 4.1e-09
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 258 61.0 4.2e-09
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 254 60.1 4.8e-09
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 254 60.1 4.8e-09
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 254 60.1 4.8e-09
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 253 59.8 4.9e-09
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 249 59.2 1.2e-08
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 249 59.2 1.2e-08
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 244 58.1 1.8e-08
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 245 58.4 2.1e-08
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 242 57.7 2.2e-08
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 245 58.4 2.3e-08
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 245 58.4 2.3e-08
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 242 57.8 3.2e-08
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 239 57.1 3.7e-08
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 234 56.1 7.4e-08
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 233 56.0 1.1e-07
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 231 55.5 1.1e-07
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 233 56.0 1.2e-07
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 229 55.2 1.9e-07
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 229 55.2 1.9e-07
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 228 55.0 2.2e-07
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 223 54.0 4.2e-07
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 223 54.0 4.2e-07
>>NP_002109 (OMIM: 142856) HLA class II histocompatibili (263 aa)
initn: 1824 init1: 1824 opt: 1824 Z-score: 1968.3 bits: 371.9 E(85289): 6.8e-103
Smith-Waterman score: 1824; 99.6% identity (99.6% similar) in 263 aa overlap (1-263:1-263)
10 20 30 40 50 60
pF1KE2 MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 MAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISW
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_002 ALTPSYGDTYTCVVEHTGAPEPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISW
190 200 210 220 230 240
250 260
pF1KE2 RRAGHSSYTPLPGSNYSEGWHIS
:::::::::::::::::::::::
NP_002 RRAGHSSYTPLPGSNYSEGWHIS
250 260
>>NP_002111 (OMIM: 600629) HLA class II histocompatibili (273 aa)
initn: 246 init1: 143 opt: 286 Z-score: 317.5 bits: 66.5 E(85289): 6.1e-11
Smith-Waterman score: 286; 26.5% identity (59.1% similar) in 264 aa overlap (1-257:13-264)
10 20 30 40
pF1KE2 MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPK-DFTYCISFN
.... : ... : . :: .... : . . :: : .:. . ::
NP_002 MGSGWVPWVVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTN-GTEKVQFVVRFIFN
10 20 30 40 50
50 60 70 80 90 100
pF1KE2 KDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGS
. . .: . . : .:..:.. ... :.. :..: :..... :. . .
NP_002 LEEYVRFDSDVG-----MFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAP
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE2 LT-NRTRPPSVQV-AKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKT
.: .: : : : . ::. .. .: : : ::::... : : ::. . .. .
NP_002 FTVGRKVQPEVTVYPERTPL-LHQHNLLHCSVTGFYPGDIKIKWFLNGQ---EERAGVMS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE2 AQP--NGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSA
. : :::::.::. : .:: : .:::.:.: . :. .: . : .. :. .
NP_002 TGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDHSSLLSPVSVEWR-AQSEYSWRKMLSGI
180 190 200 210 220
230 240 250 260
pF1KE2 VTLGLGLIIFSLGVISWRRAGHSSY--TPLPGSNYSEGWHIS
... ::::.. .:.. :: ...: : . :.. :
NP_002 AAFLLGLIFLLVGIVIQLRA-QKGYVRTQMSGNEVSRAVLLPQSC
230 240 250 260 270
>>XP_005249108 (OMIM: 615161) PREDICTED: HLA class II hi (275 aa)
initn: 253 init1: 155 opt: 286 Z-score: 317.4 bits: 66.5 E(85289): 6.1e-11
Smith-Waterman score: 286; 29.0% identity (52.8% similar) in 193 aa overlap (65-257:74-264)
40 50 60 70 80 90
pF1KE2 GTPKDFTYCISFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGL
:: ... :. . . : :: : :.
XP_005 YFTNGTERVRGVARYIYNREEYGRFDSDVGEFQAVTELGRSIEDWNNYKDFLEQERAAVD
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE2 QNCATHTQPFWGSLTNRTRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGK
. : . . . .: :.: .. . . .:.: : ::::.. . : .: .
XP_005 KVCRHNYEAELRTTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQ
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE2 LVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPM
. . . :::::.: : : .::. :: ::: ::: . :: .:
XP_005 EETAGVVSTSLIR-NGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESA
170 180 190 200 210 220
220 230 240 250 260
pF1KE2 QTLKVSVSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS
:. :. . . ::::...::.: .:. .. : :..: :
XP_005 QS-KMLSGIGGFVLGLIFLGLGLIIRHRGQKGPRGPPPAGNISAMIQSGERAQA
230 240 250 260 270
>>NP_002112 (OMIM: 142858) HLA class II histocompatibili (258 aa)
initn: 238 init1: 136 opt: 281 Z-score: 312.5 bits: 65.4 E(85289): 1.2e-10
Smith-Waterman score: 281; 30.9% identity (56.4% similar) in 181 aa overlap (65-243:73-250)
40 50 60 70 80 90
pF1KE2 GTPKDFTYCISFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLN-QKDTLMQRLRNG
:: ... :. ... : ::: : ..
NP_002 ECYAFNGTQRFLERYIYNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVP
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE2 LQNCATHTQPFWGSLTNRTR-PPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKN
. : :. . : .: . : : :.:. . .. .:.:.: :::. . . : :
NP_002 DRMC-RHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLN
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE2 GKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLS
:. . . . :::::.: : : .::. ::.::: ::: . :. .: . :
NP_002 GQEETAGVVSTNLIR-NGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWK-AQS
170 180 190 200 210
220 230 240 250 260
pF1KE2 PMQTLKVSVSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS
:. ..: . ::::: ..:.. ::.
NP_002 DSARSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA
220 230 240 250
>>NP_001230894 (OMIM: 126200,142857,180300,181000) major (266 aa)
initn: 221 init1: 125 opt: 281 Z-score: 312.3 bits: 65.5 E(85289): 1.2e-10
Smith-Waterman score: 281; 32.3% identity (59.4% similar) in 192 aa overlap (65-250:75-261)
40 50 60 70 80 90
pF1KE2 GTPKDFTYCISFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLN-QKDTLMQRLRNG
:: ... :. ... : ::: : :. :.
NP_001 HFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQK-RGR
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE2 LQNCATHTQPFWGSLTNRTR-PPSVQV--AKTTPFNTREPVMLACYVWGFYPAEVTITWR
..: :. :.: . : :.: : .:: :.. .. .:.: : ::::. . . :
NP_001 VDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHN--LLVCSVSGFYPGSIEVRWF
110 120 130 140 150 160
160 170 180 190 200
pF1KE2 KNGKLVMPHSSAHKTAQ-PNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTP
.::. .... .:. :::::.::: : .: :..::: ::: .. :. .:
NP_001 RNGQ--EEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA
170 180 190 200 210
210 220 230 240 250 260
pF1KE2 GLSPMQTLKVS-VSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS
:. .: :.. .::: .. .: . . :::. :
NP_001 RSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS
220 230 240 250 260
>>XP_011546040 (OMIM: 126200,142857,180300,181000) PREDI (266 aa)
initn: 221 init1: 125 opt: 280 Z-score: 311.2 bits: 65.3 E(85289): 1.4e-10
Smith-Waterman score: 280; 28.2% identity (54.9% similar) in 255 aa overlap (2-250:17-261)
10 20 30 40
pF1KE2 MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPK-DFTYCI
.:.. : :.:. :. . . : . . :: . .: .
XP_011 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFN-GTERVQFLERL
10 20 30 40 50
50 60 70 80 90 100
pF1KE2 SFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLN-QKDTLMQRLRNGLQNCATHTQP
.:.. .. .: . . :. ... :. ... : ::: : .: :. ... :.
XP_011 FYNQEEFVRFDSDVG-----EYRAVTELGRPVAESWNSQKDILEDR-RGQVDTVCRHNYG
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE2 FWGSLTNRTR-PPSVQV--AKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHS
:.: . : : : : ::: :.. .. .:.: : ::::. . . : .::.
XP_011 VGESFTVQRRVHPEVTVYPAKTQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGV
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE2 SAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS
. : :::::.::: : .: :..::: ::: .. :. .: :. .:
XP_011 VSTGLIQ-NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS
180 190 200 210 220 230
230 240 250 260
pF1KE2 -VSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS
:.. .::: .. .: . . :::. :
XP_011 GVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
240 250 260
>>NP_001230891 (OMIM: 123400,126200,212750,604305) HLA c (261 aa)
initn: 233 init1: 156 opt: 278 Z-score: 309.2 bits: 64.9 E(85289): 1.8e-10
Smith-Waterman score: 278; 26.8% identity (54.8% similar) in 228 aa overlap (21-243:39-255)
10 20 30 40
pF1KE2 MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCIS-FNKD
:: . .. : . . :: . : .:..
NP_001 IPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTN-GTERVRLVSRSIYNRE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE2 LLTCWDPEENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQN-CATHTQPFWGSL
.. .: . . :: ... :. ... :.. ...: : ... : . : .
NP_001 EIVRFDSDVG-----EFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTT
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE2 TNRTRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP
.: :.: .. . . .:.: : ::::.. . : .: . . .: .. :
NP_001 LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQ----EETAGVVSTP
130 140 150 160 170
170 180 190 200 210 220
pF1KE2 ---NGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVT
:::::.: : : .::. ::.::: ::: . :: .: :. :. .
NP_001 LIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQS-KMLSGIGG
180 190 200 210 220 230
230 240 250 260
pF1KE2 LGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS
. ::::...::.: .:.
NP_001 FVLGLIFLGLGLIIHHRSQKGLLH
240 250 260
>>NP_072049 (OMIM: 612735) major histocompatibility comp (266 aa)
initn: 221 init1: 125 opt: 277 Z-score: 308.0 bits: 64.7 E(85289): 2e-10
Smith-Waterman score: 277; 31.9% identity (56.5% similar) in 191 aa overlap (65-250:75-261)
40 50 60 70 80 90
pF1KE2 GTPKDFTYCISFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLN-QKDTLMQRLRNG
:. ... :. ... : ::: : :. :.
NP_072 HFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQK-RGR
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE2 LQNCATHTQPFWGSLTNRTR-PPSVQV--AKTTPFNTREPVMLACYVWGFYPAEVTITWR
..: :. :.: . : :.: : ::: :.. .. .:.: : ::::. . . :
NP_072 VDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHN--LLVCSVSGFYPGSIEVRWF
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE2 KNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPG
.::. . : :::::.::: : .: :..::: ::: .. . .:
NP_072 RNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRAR
170 180 190 200 210 220
220 230 240 250 260
pF1KE2 LSPMQTLKVS-VSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS
:. .: :.. .::: .. .: . . :::. :
NP_072 SESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
230 240 250 260
>>NP_001230890 (OMIM: 123400,126200,212750,604305) HLA c (269 aa)
initn: 228 init1: 156 opt: 276 Z-score: 306.8 bits: 64.5 E(85289): 2.4e-10
Smith-Waterman score: 276; 29.7% identity (58.2% similar) in 182 aa overlap (77-252:90-264)
50 60 70 80 90 100
pF1KE2 NKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQP--F
... :.. ... : :.. :. :
NP_001 TRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAF
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE2 WGSLTNRTRPP-SVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAH
: : :..: ... ..: .: .. .:.: : :::... . : .: . . .:
NP_001 RGILQRRVEPTVTISPSRTEALNHHN--LLVCSVTDFYPGQIKVRWFRNDQ----EETAG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE2 KTAQP---NGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS
.. : :::::.: : : .::. ::.::: ::: . :: .: :. :.
NP_001 VVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQS-KML
180 190 200 210 220 230
230 240 250 260
pF1KE2 VSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS
.. . ::::...::.: .:. .. : :
NP_001 SGVGGFVLGLIFLGLGLIIRQRSQKGPQGPPPAGLLH
240 250 260
>>NP_001287719 (OMIM: 615161) HLA class II histocompatib (264 aa)
initn: 253 init1: 155 opt: 275 Z-score: 305.9 bits: 64.3 E(85289): 2.7e-10
Smith-Waterman score: 275; 28.7% identity (52.1% similar) in 188 aa overlap (65-252:74-259)
40 50 60 70 80 90
pF1KE2 GTPKDFTYCISFNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGL
:: ... :. . . : :: : :.
NP_001 YFTNGTERVRGVARYIYNREEYGRFDSDVGEFQAVTELGRSIEDWNNYKDFLEQERAAVD
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE2 QNCATHTQPFWGSLTNRTRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGK
. : . . . .: :.: .. . . .:.: : ::::.. . : .: .
NP_001 KVCRHNYEAELRTTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQ
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE2 LVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPM
. . . :::::.: : : .::. :: ::: ::: . :: .:
NP_001 EETAGVVSTSLIR-NGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESA
170 180 190 200 210 220
220 230 240 250 260
pF1KE2 QTLKVSVSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS
:. :. . . ::::...::.: .:. .. : :
NP_001 QS-KMLSGIGGFVLGLIFLGLGLIIRHRGQKGPRGPPPAGLLH
230 240 250 260
263 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:27:13 2016 done: Mon Nov 7 00:27:14 2016
Total Scan time: 6.010 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]