FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2233, 662 aa
  1>>>pF1KE2233 662 - 662 aa - 662 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2208+/-0.000826; mu= 15.4104+/- 0.050
 mean_var=79.0270+/-15.343, 0's: 0 Z-trim(107.8): 20  B-trim: 0 in 0/52
 Lambda= 0.144273
 statistics sampled from 9777 (9791) to 9777 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS11214.1 AKAP10 gene_id:11216|Hs108|chr17       ( 662) 4333 911.6       0
CCDS82091.1 AKAP10 gene_id:11216|Hs108|chr17       ( 604) 3207 677.2 1.8e-194


>>CCDS11214.1 AKAP10 gene_id:11216|Hs108|chr17            (662 aa)
 initn: 4333 init1: 4333 opt: 4333  Z-score: 4870.8  bits: 911.6 E(32554):    0
Smith-Waterman score: 4333; 100.0% identity (100.0% similar) in 662 aa overlap (1-662:1-662)

               10        20        30        40        50        60
pF1KE2 MRGAGPSPRQSPRTLRPDPGPAMSFFRRKVKGKEQEKTSDVKSIKASISVHSPQKSTKNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRGAGPSPRQSPRTLRPDPGPAMSFFRRKVKGKEQEKTSDVKSIKASISVHSPQKSTKNH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ALLEAAGPSHVAINAISANMDSFSSSRTATLKKQPSHMEAAHFGDLGRSCLDYQTQETKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALLEAAGPSHVAINAISANMDSFSSSRTATLKKQPSHMEAAHFGDLGRSCLDYQTQETKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SLSKTLEQVLHDTIVLPYFIQFMELRRMEHLVKFWLEAESFHSTTWSRIRAHSLNTVKQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLSKTLEQVLHDTIVLPYFIQFMELRRMEHLVKFWLEAESFHSTTWSRIRAHSLNTVKQS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SLAEPVSPSKKHETTASFLTDSLDKRLEDSGSAQLFMTHSEGIDLNNRTNSTQNHLLLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLAEPVSPSKKHETTASFLTDSLDKRLEDSGSAQLFMTHSEGIDLNNRTNSTQNHLLLSQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKLMKSIEQDAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKLMKSIEQDAVN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 TFTKYISPDAAKPIPITEAMRNDIIARICGEDGQVDPNCFVLAQSIVFSAMEQEHFSEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TFTKYISPDAAKPIPITEAMRNDIIARICGEDGQVDPNCFVLAQSIVFSAMEQEHFSEFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 RSHHFCKYQIEVLTSGTVYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RSHHFCKYQIEVLTSGTVYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 AKKGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNICREGGPLPNCFTTPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AKKGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNICREGGPLPNCFTTPL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 RQAWTTMEKVFLPGFLSSNLYYKYLNDLIHSVRGDEFLGGNVSLTAPGSVGPPDESHPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RQAWTTMEKVFLPGFLSSNLYYKYLNDLIHSVRGDEFLGGNVSLTAPGSVGPPDESHPGS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 SDSSASQSSVKKASIKILKNFDEAIIVDAASLDPESLYQRTYAGKMTFGRVSDLGQFIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SDSSASQSSVKKASIKILKNFDEAIIVDAASLDPESLYQRTYAGKMTFGRVSDLGQFIRE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 SEPEPDVRKSKGSMFSQAMKKWVQGNTDEAQEELAWKIAKMIVSDIMQQAQYDQPLEKST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SEPEPDVRKSKGSMFSQAMKKWVQGNTDEAQEELAWKIAKMIVSDIMQQAQYDQPLEKST
              610       620       630       640       650       660

         
pF1KE2 KL
       ::
CCDS11 KL
         

>>CCDS82091.1 AKAP10 gene_id:11216|Hs108|chr17            (604 aa)
 initn: 3207 init1: 3207 opt: 3207  Z-score: 3604.8  bits: 677.2 E(32554): 1.8e-194
Smith-Waterman score: 3818; 91.2% identity (91.2% similar) in 662 aa overlap (1-662:1-604)

               10        20        30        40        50        60
pF1KE2 MRGAGPSPRQSPRTLRPDPGPAMSFFRRKVKGKEQEKTSDVKSIKASISVHSPQKSTKNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MRGAGPSPRQSPRTLRPDPGPAMSFFRRKVKGKEQEKTSDVKSIKASISVHSPQKSTKNH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ALLEAAGPSHVAINAISANMDSFSSSRTATLKKQPSHMEAAHFGDLGRSCLDYQTQETKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALLEAAGPSHVAINAISANMDSFSSSRTATLKKQPSHMEAAHFGDLGRSCLDYQTQETKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SLSKTLEQVLHDTIVLPYFIQFMELRRMEHLVKFWLEAESFHSTTWSRIRAHSLNTVKQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SLSKTLEQVLHDTIVLPYFIQFMELRRMEHLVKFWLEAESFHSTTWSRIRAHSLNTVKQS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SLAEPVSPSKKHETTASFLTDSLDKRLEDSGSAQLFMTHSEGIDLNNRTNSTQNHLLLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SLAEPVSPSKKHETTASFLTDSLDKRLEDSGSAQLFMTHSEGIDLNNRTNSTQNHLLLSQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKLMKSIEQDAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKLMKSIEQDAVN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 TFTKYISPDAAKPIPITEAMRNDIIARICGEDGQVDPNCFVLAQSIVFSAMEQEHFSEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TFTKYISPDAAKPIPITEAMRNDIIARICGEDGQVDPNCFVLAQSIVFSAMEQEHFSEFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 RSHHFCKYQIEVLTSGTVYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RSHHFCKYQIEVLTSGTVYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 AKKGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNICREGGPLPNCFTTPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AKKGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNICREGGPLPNCFTTPL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 RQAWTTMEKVFLPGFLSSNLYYKYLNDLIHSVRGDEFLGGNVSLTAPGSVGPPDESHPGS
       :::::::::                                                   
CCDS82 RQAWTTMEK---------------------------------------------------
                                                                   

              550       560       570       580       590       600
pF1KE2 SDSSASQSSVKKASIKILKNFDEAIIVDAASLDPESLYQRTYAGKMTFGRVSDLGQFIRE
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 -------SSVKKASIKILKNFDEAIIVDAASLDPESLYQRTYAGKMTFGRVSDLGQFIRE
            490       500       510       520       530       540  

              610       620       630       640       650       660
pF1KE2 SEPEPDVRKSKGSMFSQAMKKWVQGNTDEAQEELAWKIAKMIVSDIMQQAQYDQPLEKST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SEPEPDVRKSKGSMFSQAMKKWVQGNTDEAQEELAWKIAKMIVSDIMQQAQYDQPLEKST
            550       560       570       580       590       600  

         
pF1KE2 KL
       ::
CCDS82 KL
         




662 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:06:19 2016 done: Mon Nov  7 01:06:19 2016
 Total Scan time:  2.710 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]