FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2225, 472 aa
  1>>>pF1KE2225 472 - 472 aa - 472 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5240+/-0.000951; mu= 16.7000+/- 0.057
 mean_var=70.2044+/-14.248, 0's: 0 Z-trim(105.3): 22  B-trim: 0 in 0/49
 Lambda= 0.153071
 statistics sampled from 8355 (8363) to 8355 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.257), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS11826.1 METTL4 gene_id:64863|Hs108|chr18       ( 472) 3184 712.5 2.4e-205
CCDS77144.1 METTL4 gene_id:64863|Hs108|chr18       ( 419) 2642 592.8 2.3e-169


>>CCDS11826.1 METTL4 gene_id:64863|Hs108|chr18            (472 aa)
 initn: 3184 init1: 3184 opt: 3184  Z-score: 3800.1  bits: 712.5 E(32554): 2.4e-205
Smith-Waterman score: 3184; 99.8% identity (100.0% similar) in 472 aa overlap (1-472:1-472)

               10        20        30        40        50        60
pF1KE2 MSVVHQLSAGWLLDHLSFINKINYQLHQHHEPCCRKKEFTTSVHFESLQMDSVSSSGVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSVVHQLSAGWLLDHLSFINKINYQLHQHHEPCCRKKEFTTSVHFESLQMDSVSSSGVCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AFIASDSSTKPENDDGGNYEMFTRKFVFRPELFDVTKPYITPAVHKECQQSNEKEDLMNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AFIASDSSTKPENDDGGNYEMFTRKFVFRPELFDVTKPYITPAVHKECQQSNEKEDLMNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VKKEISISIIGKKRKRCVVFNQGELDAMEYHTKIRELILDGSLQLIQEGLKSGFLYPLFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VKKEISISIIGKKRKRCVVFNQGELDAMEYHTKIRELILDGSLQLIQEGLKSGFLYPLFE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KQDKGSKPITLPLDACSLSELCEMAKHLPSLNEMEHQTLQLVEEDTSVTEQDLFLRVVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KQDKGSKPITLPLDACSLSELCEMAKHLPSLNEMEHQTLQLVEEDTSVTEQDLFLRVVEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 NSSFTKVITLMGQKYLLPPKSSFLLSDISCMQPLLNYRKTFDVIVIDPPWQNKSVKRSNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NSSFTKVITLMGQKYLLPPKSSFLLSDISCMQPLLNYRKTFDVIVIDPPWQNKSVKRSNR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 YSYLSPLQIKQIPIPKLAAPNCLLVTWVTNRQKHLRFIKEELYPSWSVEVVAEWHWVKIT
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YSYLSPLQIQQIPIPKLAAPNCLLVTWVTNRQKHLRFIKEELYPSWSVEVVAEWHWVKIT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 NSGEFVFPLDSPHKKPYEGLILGRVQEKTALPLRNADVNVLPIPDHKLIVSVPCTLHSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NSGEFVFPLDSPHKKPYEGLILGRVQEKTALPLRNADVNVLPIPDHKLIVSVPCTLHSHK
              370       380       390       400       410       420

              430       440       450       460       470  
pF1KE2 PPLAEVLKDYIKPDGEYLELFARNLQPGWTSWGNEVLKFQHVDYFIAVESGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PPLAEVLKDYIKPDGEYLELFARNLQPGWTSWGNEVLKFQHVDYFIAVESGS
              430       440       450       460       470  

>>CCDS77144.1 METTL4 gene_id:64863|Hs108|chr18            (419 aa)
 initn: 2642 init1: 2642 opt: 2642  Z-score: 3154.1  bits: 592.8 E(32554): 2.3e-169
Smith-Waterman score: 2642; 99.7% identity (100.0% similar) in 394 aa overlap (1-394:1-394)

               10        20        30        40        50        60
pF1KE2 MSVVHQLSAGWLLDHLSFINKINYQLHQHHEPCCRKKEFTTSVHFESLQMDSVSSSGVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSVVHQLSAGWLLDHLSFINKINYQLHQHHEPCCRKKEFTTSVHFESLQMDSVSSSGVCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AFIASDSSTKPENDDGGNYEMFTRKFVFRPELFDVTKPYITPAVHKECQQSNEKEDLMNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AFIASDSSTKPENDDGGNYEMFTRKFVFRPELFDVTKPYITPAVHKECQQSNEKEDLMNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VKKEISISIIGKKRKRCVVFNQGELDAMEYHTKIRELILDGSLQLIQEGLKSGFLYPLFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VKKEISISIIGKKRKRCVVFNQGELDAMEYHTKIRELILDGSLQLIQEGLKSGFLYPLFE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KQDKGSKPITLPLDACSLSELCEMAKHLPSLNEMEHQTLQLVEEDTSVTEQDLFLRVVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KQDKGSKPITLPLDACSLSELCEMAKHLPSLNEMEHQTLQLVEEDTSVTEQDLFLRVVEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 NSSFTKVITLMGQKYLLPPKSSFLLSDISCMQPLLNYRKTFDVIVIDPPWQNKSVKRSNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NSSFTKVITLMGQKYLLPPKSSFLLSDISCMQPLLNYRKTFDVIVIDPPWQNKSVKRSNR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 YSYLSPLQIKQIPIPKLAAPNCLLVTWVTNRQKHLRFIKEELYPSWSVEVVAEWHWVKIT
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YSYLSPLQIQQIPIPKLAAPNCLLVTWVTNRQKHLRFIKEELYPSWSVEVVAEWHWVKIT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 NSGEFVFPLDSPHKKPYEGLILGRVQEKTALPLRNADVNVLPIPDHKLIVSVPCTLHSHK
       ::::::::::::::::::::::::::::::::::                          
CCDS77 NSGEFVFPLDSPHKKPYEGLILGRVQEKTALPLRGFKRLHQARWGIFGVVCSKFTARLD 
              370       380       390       400       410          

              430       440       450       460       470  
pF1KE2 PPLAEVLKDYIKPDGEYLELFARNLQPGWTSWGNEVLKFQHVDYFIAVESGS




472 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:40:20 2016 done: Mon Nov  7 15:40:21 2016
 Total Scan time:  2.790 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]