FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2223, 338 aa
  1>>>pF1KE2223 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3665+/-0.000673; mu= 15.8342+/- 0.041
 mean_var=68.2090+/-13.551, 0's: 0 Z-trim(110.5): 24  B-trim: 0 in 0/50
 Lambda= 0.155294
 statistics sampled from 11679 (11690) to 11679 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.359), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS2830.1 HEMK1 gene_id:51409|Hs108|chr3          ( 338) 2316 527.4 6.2e-150


>>CCDS2830.1 HEMK1 gene_id:51409|Hs108|chr3               (338 aa)
 initn: 2316 init1: 2316 opt: 2316  Z-score: 2805.2  bits: 527.4 E(32554): 6.2e-150
Smith-Waterman score: 2316; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KE2 MELWGRMLWALLSGPGRRGSTRGWAFSSWQPQPPLAGLSSAIELVSHWTGVFEKRGIPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MELWGRMLWALLSGPGRRGSTRGWAFSSWQPQPPLAGLSSAIELVSHWTGVFEKRGIPEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQLQCIRELSSRRLQRMPVQYILGEWDFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 RESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQLQCIRELSSRRLQRMPVQYILGEWDFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GLSLRMVPPVFIPRPETEELVEWVLEEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GLSLRMVPPVFIPRPETEELVEWVLEEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPWGPMDLIVSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTSERSWTHLPWGPMDLIVSNP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 PYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHILALAPRLLKDSGSIFLEVDPRHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 PYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHILALAPRLLKDSGSIFLEVDPRHP
              250       260       270       280       290       300

              310       320       330        
pF1KE2 ELVSSWLQSRPDLYLNLVAVRRDFCGRPRFLHIRRSGP
       ::::::::::::::::::::::::::::::::::::::
CCDS28 ELVSSWLQSRPDLYLNLVAVRRDFCGRPRFLHIRRSGP
              310       320       330        




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:00:00 2016 done: Mon Nov  7 03:00:00 2016
 Total Scan time:  2.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]