FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2222, 246 aa
  1>>>pF1KE2222 246 - 246 aa - 246 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0288+/-0.000766; mu= 10.7331+/- 0.046
 mean_var=72.7540+/-14.819, 0's: 0 Z-trim(109.2): 11  B-trim: 367 in 1/51
 Lambda= 0.150365
 statistics sampled from 10736 (10741) to 10736 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.33), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS5328.1 MRM2 gene_id:29960|Hs108|chr7           ( 246) 1657 368.2 2.8e-102
CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX         ( 327)  397 94.9 6.8e-20
CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX         ( 329)  397 94.9 6.9e-20


>>CCDS5328.1 MRM2 gene_id:29960|Hs108|chr7                (246 aa)
 initn: 1657 init1: 1657 opt: 1657  Z-score: 1949.8  bits: 368.2 E(32554): 2.8e-102
Smith-Waterman score: 1657; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE2 MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR
              190       200       210       220       230       240

             
pF1KE2 KGTVKQ
       ::::::
CCDS53 KGTVKQ
             

>>CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX              (327 aa)
 initn: 363 init1: 178 opt: 397  Z-score: 470.6  bits: 94.9 E(32554): 6.8e-20
Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206)

          10        20        30        40        50        60     
pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE
                                     ..  :: . . :: ...: :::::::....
CCDS14                           MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK
                                         10        20        30    

          70        80        90       100       110       120     
pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL
       . :...   :..:  ::::.::::  ::... :.      : :..:::  . :: :.. .
CCDS14 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI
           40        50        60              70        80        

         130       140       150       160       170       180     
pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL
         .:.:.  :...:.. . :  ::... : ::..::..:.:.    .: :. :...  .:
CCDS14 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL
        90       100       110       120       130       140       

         190       200       210       220       230       240     
pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK
       .::: :. : . : .   :  .:   :..:   ::..::. : :.. .   :   .: . 
CCDS14 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP
       150       160       170       180       190       200       

                                                                   
pF1KE2 Q                                                           
                                                                   
CCDS14 DLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP
       210       220       230       240       250       260       

>>CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX              (329 aa)
 initn: 363 init1: 178 opt: 397  Z-score: 470.5  bits: 94.9 E(32554): 6.9e-20
Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206)

          10        20        30        40        50        60     
pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE
                                     ..  :: . . :: ...: :::::::....
CCDS14                           MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK
                                         10        20        30    

          70        80        90       100       110       120     
pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL
       . :...   :..:  ::::.::::  ::... :.      : :..:::  . :: :.. .
CCDS14 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI
           40        50        60              70        80        

         130       140       150       160       170       180     
pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL
         .:.:.  :...:.. . :  ::... : ::..::..:.:.    .: :. :...  .:
CCDS14 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL
        90       100       110       120       130       140       

         190       200       210       220       230       240     
pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK
       .::: :. : . : .   :  .:   :..:   ::..::. : :.. .   :   .: . 
CCDS14 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP
       150       160       170       180       190       200       

                                                                   
pF1KE2 Q                                                           
                                                                   
CCDS14 DLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQ
       210       220       230       240       250       260       




246 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:56:45 2016 done: Mon Nov  7 15:56:45 2016
 Total Scan time:  2.380 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]