FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2217, 293 aa
  1>>>pF1KE2217 293 - 293 aa - 293 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3107+/-0.000824; mu= 15.4667+/- 0.050
 mean_var=66.8212+/-13.631, 0's: 0 Z-trim(106.7): 40  B-trim: 60 in 1/50
 Lambda= 0.156898
 statistics sampled from 9072 (9109) to 9072 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.28), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS4523.1 TBC1D7 gene_id:51256|Hs108|chr6         ( 293) 1969 454.4 4.5e-128
CCDS47376.1 TBC1D7 gene_id:51256|Hs108|chr6        ( 266) 1553 360.2 9.2e-100
CCDS58995.1 TBC1D7 gene_id:51256|Hs108|chr6        ( 247)  848 200.6 9.4e-52
CCDS83062.1 TBC1D7 gene_id:51256|Hs108|chr6        ( 164)  428 105.5 2.8e-23


>>CCDS4523.1 TBC1D7 gene_id:51256|Hs108|chr6              (293 aa)
 initn: 1969 init1: 1969 opt: 1969  Z-score: 2412.8  bits: 454.4 E(32554): 4.5e-128
Smith-Waterman score: 1969; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KE2 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KE2 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS
              250       260       270       280       290   

>>CCDS47376.1 TBC1D7 gene_id:51256|Hs108|chr6             (266 aa)
 initn: 1553 init1: 1553 opt: 1553  Z-score: 1904.6  bits: 360.2 E(32554): 9.2e-100
Smith-Waterman score: 1719; 90.8% identity (90.8% similar) in 293 aa overlap (1-293:1-266)

               10        20        30        40        50        60
pF1KE2 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW
       :::::::::::::::::::::::::::::::::::::                       
CCDS47 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRL-----------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE2 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ----GILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP
            40        50        60        70        80        90   

              130       140       150       160       170       180
pF1KE2 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KE2 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV
           160       170       180       190       200       210   

              250       260       270       280       290   
pF1KE2 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS
           220       230       240       250       260      

>>CCDS58995.1 TBC1D7 gene_id:51256|Hs108|chr6             (247 aa)
 initn: 896 init1: 844 opt: 848  Z-score: 1042.6  bits: 200.6 E(32554): 9.4e-52
Smith-Waterman score: 1557; 84.3% identity (84.3% similar) in 293 aa overlap (1-293:1-247)

               10        20        30        40        50        60
pF1KE2 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY
       :::::::                                              :::::::
CCDS58 RSPSFPL----------------------------------------------PKAFEQY
                                                            130    

              190       200       210       220       230       240
pF1KE2 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV
          140       150       160       170       180       190    

              250       260       270       280       290   
pF1KE2 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS
          200       210       220       230       240       

>>CCDS83062.1 TBC1D7 gene_id:51256|Hs108|chr6             (164 aa)
 initn: 428 init1: 428 opt: 428  Z-score: 531.5  bits: 105.5 E(32554): 2.8e-23
Smith-Waterman score: 594; 78.7% identity (78.7% similar) in 127 aa overlap (1-127:1-100)

               10        20        30        40        50        60
pF1KE2 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW
       ::::::::::::::::::::::::::::::::::::                        
CCDS83 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDR------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE2 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ---LGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP
            40        50        60        70        80        90   

              130       140       150       160       170       180
pF1KE2 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY
       :::::::                                                     
CCDS83 RSPSFPLVSGHFCLTLSSTLDRPILPAFDYIMFCLKNFWWLPVVIRIKVTHLYLAFMAMH
           100       110       120       130       140       150   




293 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:59:25 2016 done: Sun Nov  6 16:59:25 2016
 Total Scan time:  2.030 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]