FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2215, 452 aa
  1>>>pF1KE2215 452 - 452 aa - 452 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8850+/-0.000452; mu= 10.9319+/- 0.028
 mean_var=132.8865+/-26.419, 0's: 0 Z-trim(114.0): 56  B-trim: 192 in 1/53
 Lambda= 0.111259
 statistics sampled from 23531 (23582) to 23531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.276), width:  16
 Scan time:  9.490

The best scores are:                                      opt bits E(85289)
NP_006342 (OMIM: 605058) mitochondrial import inne ( 452) 2956 486.3 7.1e-137


>>NP_006342 (OMIM: 605058) mitochondrial import inner me  (452 aa)
 initn: 2956 init1: 2956 opt: 2956  Z-score: 2578.3  bits: 486.3 E(85289): 7.1e-137
Smith-Waterman score: 2956; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)

               10        20        30        40        50        60
pF1KE2 MAAAALRSGWCRCPRRCLGSGIQFLSSHNLPHGSTYQMRRPGGELPLSKSYSSGNRKGFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAAAALRSGWCRCPRRCLGSGIQFLSSHNLPHGSTYQMRRPGGELPLSKSYSSGNRKGFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SGLLDNVKQELAKNKEMKESIKKFRDEARRLEESDVLQEARRKYKTIESETVRTSEVLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SGLLDNVKQELAKNKEMKESIKKFRDEARRLEESDVLQEARRKYKTIESETVRTSEVLRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KLGELTGTVKESLHEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFRALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KLGELTGTVKESLHEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFRALS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 QGVESVKKEIDDSVLGQTGPYRRPQRLRKRTEFAGDKFKEEKVFEPNEEALGVVLHKDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QGVESVKKEIDDSVLGQTGPYRRPQRLRKRTEFAGDKFKEEKVFEPNEEALGVVLHKDSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 WYQQWKDFKENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 WYQQWKDFKENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 TEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRML
              370       380       390       400       410       420

              430       440       450  
pF1KE2 YVWALCRDQDELNPYAAWRLLDISASSTEQIL
       ::::::::::::::::::::::::::::::::
NP_006 YVWALCRDQDELNPYAAWRLLDISASSTEQIL
              430       440       450  




452 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:59:43 2016 done: Sun Nov  6 23:59:44 2016
 Total Scan time:  9.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]