Result of FASTA (ccds) for
pFN21AE2204
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2204, 970 aa
1>>>pF1KE2204 970 - 970 aa - 970 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7000+/-0.00108; mu= 12.5740+/- 0.065
mean_var=202.3938+/-39.591, 0's: 0 Z-trim(111.1): 29 B-trim: 0 in 0/52
Lambda= 0.090152
statistics sampled from 12073 (12094) to 12073 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.372), width: 16
Scan time: 3.570
The best scores are: opt bits E(32554)
CCDS44856.1 DDX11 gene_id:1663|Hs108|chr12 ( 970) 6542 864.4 0
CCDS41767.1 DDX11 gene_id:1663|Hs108|chr12 ( 906) 5402 716.1 7.5e-206
CCDS58224.1 DDX11 gene_id:1663|Hs108|chr12 ( 880) 5220 692.5 9.8e-199
CCDS8721.1 DDX11 gene_id:1663|Hs108|chr12 ( 856) 4464 594.1 3.8e-169
CCDS13530.3 RTEL1 gene_id:51750|Hs108|chr20 (1243) 438 70.7 2.1e-11
>>CCDS44856.1 DDX11 gene_id:1663|Hs108|chr12 (970 aa)
initn: 6542 init1: 6542 opt: 6542 Z-score: 4610.1 bits: 864.4 E(32554): 0
Smith-Waterman score: 6542; 100.0% identity (100.0% similar) in 970 aa overlap (1-970:1-970)
10 20 30 40 50 60
pF1KE2 MANETQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MANETQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 WLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 QFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 QLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTIND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTIND
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 FLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 TTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQSTLKFLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQSTLKFLLL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 NPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 LVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHW
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 EKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 EGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRPGTPREGSGGEPVHEGRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRPGTPREGSGGEPVHEGRQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 PVHRQGHQAPEGFCQRSAPGPAICPAPCPGQAAGLDPSPCGGQSYLWPRHCCCAEVSPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PVHRQGHQAPEGFCQRSAPGPAICPAPCPGQAAGLDPSPCGGQSYLWPRHCCCAEVSPGE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE2 VGLFLMGNHTTAWRRALPLSCPLETVFVVGVVCGDPVTKVKPRRRVWSPECCQDPGTGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VGLFLMGNHTTAWRRALPLSCPLETVFVVGVVCGDPVTKVKPRRRVWSPECCQDPGTGVS
910 920 930 940 950 960
970
pF1KE2 SRRRKWGNPE
::::::::::
CCDS44 SRRRKWGNPE
970
>>CCDS41767.1 DDX11 gene_id:1663|Hs108|chr12 (906 aa)
initn: 5395 init1: 5395 opt: 5402 Z-score: 3809.2 bits: 716.1 E(32554): 7.5e-206
Smith-Waterman score: 5402; 95.0% identity (96.2% similar) in 875 aa overlap (1-867:1-875)
10 20 30 40 50 60
pF1KE2 MANETQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MANETQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 WLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 QFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 QLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTIND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTIND
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 FLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 TTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQSTLKFLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQSTLKFLLL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 NPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 LVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHW
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 EKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMS
730 740 750 760 770 780
790 800 810 820 830
pF1KE2 EGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRPGTPREGSG------GEP
::::::::::::::::::::::::::::::::::::::: :: :.. .
CCDS41 EGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKA
790 800 810 820 830 840
840 850 860 870 880 890
pF1KE2 VHE--GRQPVHRQGHQAPEGFCQRSAPGPAICPAPCPGQAAGLDPSPCGGQSYLWPRHCC
:.. :: :.. . . :: : :.. :
CCDS41 VNQSIGRAIRHQKDFASVVLLDQRYARPPVLAKLPAWIRARVEVKATFGPAIAAVQKFHR
850 860 870 880 890 900
900 910 920 930 940 950
pF1KE2 CAEVSPGEVGLFLMGNHTTAWRRALPLSCPLETVFVVGVVCGDPVTKVKPRRRVWSPECC
CCDS41 EKSASS
>>CCDS58224.1 DDX11 gene_id:1663|Hs108|chr12 (880 aa)
initn: 5213 init1: 5213 opt: 5220 Z-score: 3681.4 bits: 692.5 E(32554): 9.8e-199
Smith-Waterman score: 5220; 94.8% identity (96.1% similar) in 849 aa overlap (27-867:1-849)
10 20 30 40 50 60
pF1KE2 MANETQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALS
::::::::::::::::::::::::::::::::::
CCDS58 MAELYRVLEAGKIGIFESPTGTGKSLSLICGALS
10 20 30
70 80 90 100 110 120
pF1KE2 WLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 WLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE2 KEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLET
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE2 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE2 QFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE2 EEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE2 AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHS
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE2 QLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTIND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTIND
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE2 FLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPR
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE2 TTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQSTLKFLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQSTLKFLLL
520 530 540 550 560 570
610 620 630 640 650 660
pF1KE2 NPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILP
580 590 600 610 620 630
670 680 690 700 710 720
pF1KE2 LVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHW
640 650 660 670 680 690
730 740 750 760 770 780
pF1KE2 EKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMS
700 710 720 730 740 750
790 800 810 820 830
pF1KE2 EGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRPGTPREGSG------GEP
::::::::::::::::::::::::::::::::::::::: :: :.. .
CCDS58 EGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKA
760 770 780 790 800 810
840 850 860 870 880 890
pF1KE2 VHE--GRQPVHRQGHQAPEGFCQRSAPGPAICPAPCPGQAAGLDPSPCGGQSYLWPRHCC
:.. :: :.. . . :: : :.. :
CCDS58 VNQSIGRAIRHQKDFASVVLLDQRYARPPVLAKLPAWIRARVEVKATFGPAIAAVQKFHR
820 830 840 850 860 870
900 910 920 930 940 950
pF1KE2 CAEVSPGEVGLFLMGNHTTAWRRALPLSCPLETVFVVGVVCGDPVTKVKPRRRVWSPECC
CCDS58 EKSASS
880
>>CCDS8721.1 DDX11 gene_id:1663|Hs108|chr12 (856 aa)
initn: 4464 init1: 4464 opt: 4464 Z-score: 3150.1 bits: 594.1 E(32554): 3.8e-169
Smith-Waterman score: 4932; 89.3% identity (90.5% similar) in 875 aa overlap (1-867:1-825)
10 20 30 40 50 60
pF1KE2 MANETQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MANETQKVGAIHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 WLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 WLRDFEQKKREEEARLLETGTGPLHDEKDESLCLSSSCEGAAGTPRPAGEPAWVTQFVQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLSREMLET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 QFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 AAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 QLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTIND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTIND
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 FLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 FLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 TTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQSTLKFLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 TTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQGSLSQSTLKFLLL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 NPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 NPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 LVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHW
::::::::::::::::::::::::
CCDS87 LVICSGISNQPLEFTFQKRELPQM------------------------------------
670 680
730 740 750 760 770 780
pF1KE2 EKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMS
::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 --------------IFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMS
690 700 710 720 730
790 800 810 820 830
pF1KE2 EGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRPGTPREGSG------GEP
::::::::::::::::::::::::::::::::::::::: :: :.. .
CCDS87 EGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKA
740 750 760 770 780 790
840 850 860 870 880 890
pF1KE2 VHE--GRQPVHRQGHQAPEGFCQRSAPGPAICPAPCPGQAAGLDPSPCGGQSYLWPRHCC
:.. :: :.. . . :: : :.. :
CCDS87 VNQSIGRAIRHQKDFASVVLLDQRYARPPVLAKLPAWIRARVEVKATFGPAIAAVQKFHR
800 810 820 830 840 850
900 910 920 930 940 950
pF1KE2 CAEVSPGEVGLFLMGNHTTAWRRALPLSCPLETVFVVGVVCGDPVTKVKPRRRVWSPECC
CCDS87 EKSASS
>>CCDS13530.3 RTEL1 gene_id:51750|Hs108|chr20 (1243 aa)
initn: 713 init1: 209 opt: 438 Z-score: 318.2 bits: 70.7 E(32554): 2.1e-11
Smith-Waterman score: 605; 25.2% identity (55.4% similar) in 652 aa overlap (226-849:106-718)
200 210 220 230 240 250
pF1KE2 ELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLAQFVHEVKKSPFGKDV
: :: : :::::::.: ..:.... . .
CCDS13 AQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVINELRNTSYRSRC
80 90 100 110 120 130
260 270 280 290 300
pF1KE2 R-----LVSLGSRQNLC--VNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAEEEKPKRRR
: : . : .. . : ::: . . :. . ...:... . :.
CCDS13 RATLWVLETAPPRPTVLSPTRPKVCVLGSREQL---CIHPEVKKQESNH---LQIHLCRK
140 150 160 170 180
310 320 330 340 350 360
pF1KE2 QEKQAACPFYNHEQMGLLRDEALAEVKDMEQLLALGKEARACPYYGSRLAIPAAQLVVLP
. . .: :::. . :..: . . :.:.:. :.. :.:::: :: :... .:
CCDS13 KVASRSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMP
190 200 210 220 230 240
370 380 390 400
pF1KE2 YQMLLHAATRQAAGIRLQDQVVIIDEAHNLI--------------DTITGMHSVE-----
:..:: : .:.: .: :. :::.:::::. : .:. ..
CCDS13 YNYLLDAKSRRAHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEE
250 260 270 280 290 300
410 420 430 440 450 460
pF1KE2 -VSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSL
....: . : .. : .. ... ::.:: :: . . .. . ...
CCDS13 QTKAAQQGEPHPEFSADSPSPGLNMELEDIAKLKMILLRLEGAIDA----VELPGDDSGV
310 320 330 340 350 360
470 480 490 500 510 520
pF1KE2 SQTGTELKTINDFLFQSQIDNINLFKVQRYCEKSMISRKLFGFTERYGAVFSSREQPKLA
.. :. : ... ..:: :.. . : . ... . .. : :. .. :::
CCDS13 TKPGSY---IFELFAEAQIT----FQT-KGCILDSLDQIIQHLAGRAGVFTNTAGLQKLA
370 380 390 400 410
530 540 550 560 570 580
pF1KE2 GFQQFLQSLQPRTTEALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVILSRQG
. :.. :..: ..:.. . ..:. : .::. . :: : . . . .
CCDS13 DIIQIVFSVDPSE----GSPGSPAGLGALQ--SYKVHIHPDAGHRRTA-QRSDAWSTTAA
420 430 440 450 460 470
590 600 610 620 630 640
pF1KE2 SLSQSTLKFLLLNPAVHFAQVVKE-CRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEF
..:.. ..:. . ..:.. :......::. :::.: .. . : .
CCDS13 RKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEM------QIPFPVCL
480 490 500 510 520
650 660 670 680 690 700
pF1KE2 SCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFF
:.: .: :. : .. : .:..: . .. .:. : :. ::: :.. ::
CCDS13 ENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFF
530 540 550 560 570 580
710 720 730 740 750 760
pF1KE2 PSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVT
::: ... :. : .. : : .: ::.: . ... :: . : :. :
CCDS13 PSYPVMEKSLEFWRARDLARKMEALKPLFVEPRSKGSFSETISAYYARVAAPGS-----T
590 600 610 620 630
770 780 790 800 810 820
pF1KE2 GALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRPGTPR
:: .:.: :: :::..:::. :: :...:.:.: . .. :: .::. .. . :.
CCDS13 GATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLDE-MKGQGGAGG
640 650 660 670 680 690
830 840 850 860 870 880
pF1KE2 EGSGGEPVHEGRQPVHRQGHQAPEGFCQRSAPGPAICPAPCPGQAAGLDPSPCGGQSYLW
. .:. . :: . : .::
CCDS13 QFLSGQEWY--RQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHV
700 710 720 730 740 750
970 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:26:02 2016 done: Tue Nov 8 06:26:02 2016
Total Scan time: 3.570 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]