Result of FASTA (ccds) for
pFN21AE2201
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2201, 711 aa
1>>>pF1KE2201 711 - 711 aa - 711 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.0405+/-0.00113; mu= 0.2268+/- 0.069
mean_var=592.3961+/-120.815, 0's: 0 Z-trim(117.4): 51 B-trim: 0 in 0/54
Lambda= 0.052695
statistics sampled from 18046 (18092) to 18046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.556), width: 16
Scan time: 3.500
The best scores are: opt bits E(32554)
CCDS45936.1 KHSRP gene_id:8570|Hs108|chr19 ( 711) 5155 407.0 5e-113
CCDS683.1 FUBP1 gene_id:8880|Hs108|chr1 ( 644) 2330 192.2 2.1e-48
CCDS43893.1 FUBP3 gene_id:8939|Hs108|chr9 ( 572) 1591 135.9 1.6e-31
>>CCDS45936.1 KHSRP gene_id:8570|Hs108|chr19 (711 aa)
initn: 5155 init1: 5155 opt: 5155 Z-score: 2142.7 bits: 407.0 E(32554): 5e-113
Smith-Waterman score: 5155; 100.0% identity (100.0% similar) in 711 aa overlap (1-711:1-711)
10 20 30 40 50 60
pF1KE2 MSDYSTGGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSDYSTGGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PPGGGGPGIRKDAFADAVQRARQIAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PPGGGGPGIRKDAFADAVQRARQIAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KKLASQGDSISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KKLASQGDSISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 DDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 GPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 PQQIDHAKQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PQQIDHAKQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPH
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 QYPPQGWGNTYPQWQPPAPHDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QYPPQGWGNTYPQWQPPAPHDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 PPAQGEPPQPPPTGQSDYTKAWEEYYKKIGQQPQQPGAPPQQDYTKAWEEYYKKQAQVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PPAQGEPPQPPPTGQSDYTKAWEEYYKKIGQQPQQPGAPPQQDYTKAWEEYYKKQAQVAT
610 620 630 640 650 660
670 680 690 700 710
pF1KE2 GGGPGAPPGSQPDYSAAWAEYYRQQAAYYGQTPGPGGPQPPPTQQGQQQAQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGGPGAPPGSQPDYSAAWAEYYRQQAAYYGQTPGPGGPQPPPTQQGQQQAQ
670 680 690 700 710
>>CCDS683.1 FUBP1 gene_id:8880|Hs108|chr1 (644 aa)
initn: 1098 init1: 673 opt: 2330 Z-score: 982.5 bits: 192.2 E(32554): 2.1e-48
Smith-Waterman score: 2831; 63.3% identity (78.7% similar) in 684 aa overlap (50-707:10-644)
20 30 40 50 60 70
pF1KE2 GGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGPGIRKDAFADAVQ
:..::::: . :::: : .::: ::.:
CCDS68 MADYSTVPPPSSGSAGGGG---GGGGGGGVNDAFKDALQ
10 20 30
80 90 100 110 120 130
pF1KE2 RARQIAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPESKKLASQGDSISSQLGPIHP
:::::::::::::.:..:.. :.:.::::: :::::::..::.: :.::...:: :.:
CCDS68 RARQIAAKIGGDAGTSLNSN--DYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQ
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE2 PP-RTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAP
:. :::::.:::::::.:::::::::..:::.::::.::.:::::::::: :::.:
CCDS68 QQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTP
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE2 ESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQ
::::.:: .::.:: .:: .: :: . : ...::::::::.:::::::::::::::
CCDS68 ESVQSAKRLLDQIVEKGRPAPG--FHHG--DGPGNAVQEIMIPASKAGLVIGKGGETIKQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE2 LQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGD-RNEY
:::::::::..:::: :::..:::::: ::::::::: :::.... :::::: . ::::
CCDS68 LQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI--RDQGGFREVRNEY
220 230 240 250 260
320 330 340 350 360 370
pF1KE2 GSRIGG--GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP
:::::: :::::.:: .::.::::.:::::::::::::::::: :::: ::.::.: ::
CCDS68 GSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP
270 280 290 300 310 320
380 390 400 410 420 430
pF1KE2 PDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNW--GPPGG--EMTFSI
::::.:::.::.:::.:...: :: ::: ::::::::::::: ::::: :..: .
CCDS68 PDRCQHAAEIITDLLRSVQAGNPG---GPG--PGGRGRGRGQGNWNMGPPGGLQEFNFIV
330 340 350 360 370 380
440 450 460 470 480 490
pF1KE2 PTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
:: : ::.::.:::..:.:.::.:: .:..:. :::.:::.::: :::.:::::.:.:::
CCDS68 PTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
390 400 410 420 430 440
500 510 520 530
pF1KE2 EEKIEGPLCPVGP----GPGG----------PGPAGPMGPFNPGPFNQGPPGAPPHAGGP
:::: ::. :.:: :: : :::. ::::.::.:.: :::: ::.
CCDS68 EEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHG---
450 460 470 480 490 500
540 550 560 570 580 590
pF1KE2 PPHQYPPQGWGNTYPQWQPPAPHDPSKAAAAAADPN-AAWAAYYSHYYQQ---PPGPVPG
:: : ::::::.::.:: :: ::.::.. ::: :::::::.::::: :: .:.
CCDS68 PPAPYAPQGWGNAYPHWQQQAPPDPAKAGT---DPNSAAWAAYYAHYYQQQAQPPPAAPA
510 520 530 540 550
600 610 620 630 640 650
pF1KE2 PAPAPAAPPAQGEPPQPPPTGQSDYTKAWEEYYKKIGQQPQQPGAPPQQDYTKAWEEYYK
::. . .::. .: :.:: ::::::::::::.:: :
CCDS68 GAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAP-----------------
560 570 580 590 600
660 670 680 690 700 710
pF1KE2 KQAQVATGGGPGAPPGSQPDYSAAWAEYYRQQAAYYGQTPGPGGPQPPPTQQGQQQAQ
:::::.:::::::::::::::::::.:: : :: ::. :::
CCDS68 ----------TGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ
610 620 630 640
>>CCDS43893.1 FUBP3 gene_id:8939|Hs108|chr9 (572 aa)
initn: 1613 init1: 381 opt: 1591 Z-score: 679.4 bits: 135.9 E(32554): 1.6e-31
Smith-Waterman score: 1872; 49.1% identity (71.5% similar) in 645 aa overlap (63-694:7-563)
40 50 60 70 80 90
pF1KE2 GPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGP-GIRKDAFADAVQRARQIAAKIGGD
: ..: :.. ..:.::..:.::::::: :
CCDS43 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKI--D
10 20 30
100 110 120 130 140
pF1KE2 AATTVNNSTP--D---FGFGGQKRQLEDGDQPESKKLASQGDSISSQLGP-IHPPPRTSM
. .::::: : .:.: ::: :.:: ...::: .: :: .
CCDS43 SIPHLNNSTPLVDPSVYGYGVQKRPLDDG--------------VGNQLGALVHQ--RTVI
40 50 60 70
150 160 170 180 190 200
pF1KE2 TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAK
:::..::: :::.:::::::::..:: .::::.::. .:.:.::: :::.:::...::
CCDS43 TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK
80 90 100 110 120 130
210 220 230 240 250 260
pF1KE2 MMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGV
.: .::.: :.:: ::.. .. :.:.:::.:::.:.:::::.:::::::::::.::
CCDS43 RLLGQIVDRCRNGPG--FHNDIDS--NSTIQEILIPASKVGLVIGRGGETIKQLQERTGV
140 150 160 170 180 190
270 280 290 300 310 320
pF1KE2 KMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGF-GDRNEYGSRIGGG
::..:::: :..:::::: :: .::::: :::..:.::.::. : : :....::.:::
CCDS43 KMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGG
200 210 220 230 240 250
330 340 350 360 370 380
pF1KE2 -IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAA
:.: ::: .::.::::.:::::::::::::::::: ::: .::. :..:::::::.:::
CCDS43 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAA
260 270 280 290 300 310
390 400 410 420 430
pF1KE2 RIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNW--GPPGG--EMTFSIPTHKCGLV
.::..:. . . : : ..::::::.:.: : ::: :.:...:. :::::
CCDS43 HIISELILTAQERD-----GFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLV
320 330 340 350 360
440 450 460 470 480 490
pF1KE2 IGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL
::.::::.:.::::.:: ::..:. :::.:::.. : ::: ::::. :.:::.::.
CCDS43 IGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKV----
370 380 390 400 410 420
500 510 520 530 540 550
pF1KE2 CPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAP
:: . ..: : :. .::.: :: :::: . .::.. :
CCDS43 -------GGTNLGAP-GAFGQSPFSQ-PP-APPHQ-----NTFPPRSSGCF---------
430 440 450 460
560 570 580 590 600 610
pF1KE2 HDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPPQPPPTGQSDYT
:. :: . ..:... :: :: : : ..
CCDS43 --PNMAAKVNGNPHST--------------PVSGP-------------PAFLTQGWGSTY
470 480 490
620 630 640 650 660 670
pF1KE2 KAWEEYYKKIGQQPQQPGAPPQQDYTKAWEEYYKKQAQVATGGGPGAPPGSQPDYSAAWA
.::.. ... .: .:: . : .:.::::.:::::...:... : : .: :::. :::
CCDS43 QAWQQPTQQVPSQQSQPQSS-QPNYSKAWEDYYKKQSHAASAA-PQA--SSPPDYTMAWA
500 510 520 530 540
680 690 700 710
pF1KE2 EYYRQQAAYYGQTPGPGGPQPPPTQQGQQQAQ
::::::.:.:::: :
CCDS43 EYYRQQVAFYGQTLGQAQAHSQEQ
550 560 570
711 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:46:14 2016 done: Mon Nov 7 19:46:14 2016
Total Scan time: 3.500 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]