Result of FASTA (omim) for
pFN21AE2199
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2199, 93 aa
1>>>pF1KE2199 93 - 93 aa - 93 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9393+/-0.000298; mu= 10.5869+/- 0.018
mean_var=55.7195+/-11.023, 0's: 0 Z-trim(117.6): 68 B-trim: 0 in 0/49
Lambda= 0.171819
statistics sampled from 29731 (29800) to 29731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.349), width: 16
Scan time: 4.270
The best scores are: opt bits E(85289)
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 619 160.7 3.1e-40
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 619 160.7 3.1e-40
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 574 149.5 7.1e-37
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 423 112.1 1.3e-25
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 418 110.9 3.1e-25
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 379 101.2 2.4e-22
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 371 99.2 9.6e-22
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 338 91.0 2.8e-19
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 323 87.3 3.8e-18
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 290 79.2 1.3e-15
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 277 75.9 1.1e-14
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 273 74.9 2.2e-14
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 272 74.7 2.6e-14
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 270 74.2 3.8e-14
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 266 73.1 5e-14
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 266 73.1 5e-14
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 266 73.2 6.4e-14
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 248 68.7 1.6e-12
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 248 68.7 1.6e-12
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 247 68.5 2.2e-12
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 243 67.5 4.2e-12
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 241 67.0 5.1e-12
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 241 67.0 5.1e-12
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 240 66.8 7.4e-12
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 240 66.8 7.4e-12
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 241 67.1 7.4e-12
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 237 66.0 1.1e-11
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 238 66.3 1.2e-11
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 231 64.5 2.9e-11
NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 226 63.4 1e-10
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 224 62.8 1.1e-10
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 224 62.8 1.1e-10
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 224 62.8 1.1e-10
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 190 54.4 3.2e-08
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 190 54.4 3.2e-08
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 184 52.9 9.4e-08
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 182 52.4 1.3e-07
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 172 49.9 7.1e-07
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 172 49.9 8.9e-07
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 172 50.0 9e-07
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 171 49.7 1.1e-06
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 171 49.7 1.2e-06
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 153 45.2 2e-05
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 144 43.0 0.0001
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 144 43.0 0.0001
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 144 43.0 0.0001
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 142 42.5 0.00013
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 137 41.2 0.00029
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 142 42.8 0.00042
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 124 38.0 0.0032
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 619 init1: 619 opt: 619 Z-score: 843.3 bits: 160.7 E(85289): 3.1e-40
Smith-Waterman score: 619; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:::::::::::::::::::::::::::::::::
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 619 init1: 619 opt: 619 Z-score: 843.3 bits: 160.7 E(85289): 3.1e-40
Smith-Waterman score: 619; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:::::::::::::::::::::::::::::::::
NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa)
initn: 572 init1: 460 opt: 574 Z-score: 783.1 bits: 149.5 E(85289): 7.1e-37
Smith-Waterman score: 574; 94.6% identity (97.8% similar) in 93 aa overlap (1-93:1-92)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:::::::::::::::::::: .:: :::::::::::::::::::::::::::::::::::
NP_002 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:.:::::::.:::::::::::::::::::::::
NP_002 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 435 init1: 386 opt: 423 Z-score: 580.8 bits: 112.1 E(85289): 1.3e-25
Smith-Waterman score: 423; 59.8% identity (90.2% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::.
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:.:.: ::::.:::::::: :::.:: ::::.
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 413 init1: 378 opt: 418 Z-score: 574.1 bits: 110.9 E(85289): 3.1e-25
Smith-Waterman score: 418; 58.7% identity (90.2% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::.
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:.:.: :::..:::::::: :::.:: ::::.
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like (87 aa)
initn: 372 init1: 229 opt: 379 Z-score: 522.2 bits: 101.2 E(85289): 2.4e-22
Smith-Waterman score: 379; 55.4% identity (85.9% similar) in 92 aa overlap (1-92:1-87)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::.
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:.:. :.:::::::: :::.:: ::::.
NP_001 PAVV-----GKQVCADPSESWVQEYVYDLELN
70 80
>>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur (89 aa)
initn: 385 init1: 319 opt: 371 Z-score: 511.3 bits: 99.2 E(85289): 9.6e-22
Smith-Waterman score: 371; 60.2% identity (79.6% similar) in 93 aa overlap (1-93:1-89)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:. .::: ::.:::::: : .. . ::. ::: ::::.::.:: ::: :: :
NP_002 MKGLAAALLVLVCTMALC----SCAQVGTNKELCCLVYTSWQIPQKFIVDYSETSPQCPK
10 20 30 40 50
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:.::.:::::::.::::...:::::.:::.:.:
NP_002 PGVILLTKRGRQICADPNKKWVQKYISDLKLNA
60 70 80
>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa)
initn: 339 init1: 260 opt: 338 Z-score: 467.0 bits: 91.0 E(85289): 2.8e-19
Smith-Waterman score: 338; 48.9% identity (83.7% similar) in 92 aa overlap (1-92:1-91)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:.::.:::::.: . ::: . ..: ..:: : :::.: .: .:. : .:: ::..::.
NP_002 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSN
10 20 30 40 50
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:.:.:.:...:::::.: ..::..:...::.:
NP_002 PAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor (93 aa)
initn: 325 init1: 307 opt: 323 Z-score: 446.7 bits: 87.3 E(85289): 3.8e-18
Smith-Waterman score: 323; 47.3% identity (82.4% similar) in 91 aa overlap (1-90:1-91)
10 20 30 40 50
pF1KE2 MQVSTAALAV-LLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
:..:.::. :: :.:: ... :. . :. :::.::. .::.. : ::.::.::::
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
10 20 30 40 50 60
60 70 80 90
pF1KE2 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
::...:.::::..::..::..::: :..:..
NP_116 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90
>>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor (109 aa)
initn: 310 init1: 279 opt: 290 Z-score: 401.5 bits: 79.2 E(85289): 1.3e-15
Smith-Waterman score: 290; 55.0% identity (91.7% similar) in 60 aa overlap (31-90:48-107)
10 20 30 40 50 60
pF1KE2 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
:. :::.::. .::.. : ::.::.:::::
NP_116 LGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSK
20 30 40 50 60 70
70 80 90
pF1KE2 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
:...:.::::..::..::..::: :..:..
NP_116 PGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
80 90 100
93 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:37:06 2016 done: Sun Nov 6 06:37:07 2016
Total Scan time: 4.270 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]