FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2190, 531 aa
  1>>>pF1KE2190 531 - 531 aa - 531 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4777+/-0.000392; mu= 9.3745+/- 0.025
 mean_var=134.7830+/-28.352, 0's: 0 Z-trim(116.2): 12  B-trim: 1739 in 2/51
 Lambda= 0.110473
 statistics sampled from 27222 (27231) to 27222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.319), width:  16
 Scan time: 10.370

The best scores are:                                      opt bits E(85289)
NP_078805 (OMIM: 607393,608266) parafibromin [Homo ( 531) 3504 570.1 5.9e-162
XP_006711600 (OMIM: 607393,608266) PREDICTED: para ( 347) 2073 341.9 1.9e-93


>>NP_078805 (OMIM: 607393,608266) parafibromin [Homo sap  (531 aa)
 initn: 3504 init1: 3504 opt: 3504  Z-score: 3028.6  bits: 570.1 E(85289): 5.9e-162
Smith-Waterman score: 3504; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531)

               10        20        30        40        50        60
pF1KE2 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 IIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 IIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 VTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 VTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY
              430       440       450       460       470       480

              490       500       510       520       530 
pF1KE2 DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF
              490       500       510       520       530 

>>XP_006711600 (OMIM: 607393,608266) PREDICTED: parafibr  (347 aa)
 initn: 2073 init1: 2073 opt: 2073  Z-score: 1798.7  bits: 341.9 E(85289): 1.9e-93
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)

               10        20        30        40        50        60
pF1KE2 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTP
       ::::::::::::::::::::::::                                    
XP_006 KEETEGFKIDTMGTYHGMTLKSVTVFFLMDVSFSVVLLVFPASHVPL             
              310       320       330       340                    




531 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:45:37 2016 done: Sun Nov  6 18:45:39 2016
 Total Scan time: 10.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]