FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2190, 531 aa
  1>>>pF1KE2190 531 - 531 aa - 531 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4268+/-0.000948; mu= 9.6964+/- 0.057
 mean_var=128.3916+/-25.613, 0's: 0 Z-trim(108.9): 10  B-trim: 0 in 0/51
 Lambda= 0.113189
 statistics sampled from 10502 (10505) to 10502 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.323), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS1382.1 CDC73 gene_id:79577|Hs108|chr1          ( 531) 3504 583.6  2e-166


>>CCDS1382.1 CDC73 gene_id:79577|Hs108|chr1               (531 aa)
 initn: 3504 init1: 3504 opt: 3504  Z-score: 3101.5  bits: 583.6 E(32554): 2e-166
Smith-Waterman score: 3504; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531)

               10        20        30        40        50        60
pF1KE2 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 IIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 VTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY
              430       440       450       460       470       480

              490       500       510       520       530 
pF1KE2 DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF
              490       500       510       520       530 




531 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:45:37 2016 done: Sun Nov  6 18:45:37 2016
 Total Scan time:  3.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]