FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2187, 474 aa
  1>>>pF1KE2187 474 - 474 aa - 474 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 16.5706+/-0.000451; mu= -32.4472+/- 0.028
 mean_var=677.6327+/-138.157, 0's: 0 Z-trim(126.0): 7  B-trim: 0 in 0/62
 Lambda= 0.049269
 statistics sampled from 51038 (51051) to 51038 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.599), width:  16
 Scan time: 10.300

The best scores are:                                      opt bits E(85289)
NP_005427 (OMIM: 188550,601985) coiled-coil domain ( 474) 3113 235.7 2.2e-61


>>NP_005427 (OMIM: 188550,601985) coiled-coil domain-con  (474 aa)
 initn: 3113 init1: 3113 opt: 3113  Z-score: 1223.1  bits: 235.7 E(85289): 2.2e-61
Smith-Waterman score: 3113; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474)

               10        20        30        40        50        60
pF1KE2 MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 QALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 APPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 APPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 SSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSP
              370       380       390       400       410       420

              430       440       450       460       470    
pF1KE2 DKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP
              430       440       450       460       470    




474 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:30:04 2016 done: Sun Nov  6 15:30:06 2016
 Total Scan time: 10.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]