FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2187, 474 aa
  1>>>pF1KE2187 474 - 474 aa - 474 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.6538+/-0.0011; mu= -14.7526+/- 0.067
 mean_var=576.4635+/-120.127, 0's: 0 Z-trim(117.8): 7  B-trim: 574 in 2/54
 Lambda= 0.053418
 statistics sampled from 18593 (18599) to 18593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.571), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(32554)
CCDS7257.1 CCDC6 gene_id:8030|Hs108|chr10          ( 474) 3113 254.0 2.6e-67


>>CCDS7257.1 CCDC6 gene_id:8030|Hs108|chr10               (474 aa)
 initn: 3113 init1: 3113 opt: 3113  Z-score: 1322.0  bits: 254.0 E(32554): 2.6e-67
Smith-Waterman score: 3113; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474)

               10        20        30        40        50        60
pF1KE2 MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 QALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 APPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 APPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 SSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGTSHGITRPSPRRSNSP
              370       380       390       400       410       420

              430       440       450       460       470    
pF1KE2 DKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DKFKRPTPPPSPNTQTPVQPPPPPPPPPMQPTVPSAATSQPTPSQHSAHPSSQP
              430       440       450       460       470    




474 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:30:04 2016 done: Sun Nov  6 15:30:04 2016
 Total Scan time:  3.910 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]