FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2182, 181 aa
  1>>>pF1KE2182 181 - 181 aa - 181 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4784+/-0.000344; mu= -0.1024+/- 0.022
 mean_var=214.6906+/-42.242, 0's: 0 Z-trim(122.2): 2  B-trim: 539 in 1/51
 Lambda= 0.087532
 statistics sampled from 39946 (39949) to 39946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.468), width:  16
 Scan time:  6.710

The best scores are:                                      opt bits E(85289)
NP_055706 (OMIM: 607075) 28 kDa heat- and acid-sta ( 181) 1160 157.9 8.4e-39


>>NP_055706 (OMIM: 607075) 28 kDa heat- and acid-stable   (181 aa)
 initn: 1160 init1: 1160 opt: 1160  Z-score: 817.6  bits: 157.9 E(85289): 8.4e-39
Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE2 MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 DESEDEEDDYQQKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DESEDEEDDYQQKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KERYMKMHLAGKTEQAKADLARLAIIRKQREEAARKKEEERKAKDDATLSGKRMQSLSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KERYMKMHLAGKTEQAKADLARLAIIRKQREEAARKKEEERKAKDDATLSGKRMQSLSLN
              130       140       150       160       170       180

        
pF1KE2 K
       :
NP_055 K
        




181 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:56:11 2016 done: Mon Nov  7 15:56:12 2016
 Total Scan time:  6.710 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]