FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2182, 181 aa
  1>>>pF1KE2182 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0591+/-0.00085; mu= 2.7553+/- 0.052
 mean_var=208.0953+/-41.638, 0's: 0 Z-trim(114.4): 8  B-trim: 119 in 1/52
 Lambda= 0.088908
 statistics sampled from 14978 (14983) to 14978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.46), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS5662.1 PDAP1 gene_id:11333|Hs108|chr7          ( 181) 1160 160.0 7.2e-40


>>CCDS5662.1 PDAP1 gene_id:11333|Hs108|chr7               (181 aa)
 initn: 1160 init1: 1160 opt: 1160  Z-score: 829.2  bits: 160.0 E(32554): 7.2e-40
Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE2 MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 DESEDEEDDYQQKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DESEDEEDDYQQKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KERYMKMHLAGKTEQAKADLARLAIIRKQREEAARKKEEERKAKDDATLSGKRMQSLSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KERYMKMHLAGKTEQAKADLARLAIIRKQREEAARKKEEERKAKDDATLSGKRMQSLSLN
              130       140       150       160       170       180

        
pF1KE2 K
       :
CCDS56 K
        




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:56:10 2016 done: Mon Nov  7 15:56:10 2016
 Total Scan time:  2.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]