FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2175, 124 aa
  1>>>pF1KE2175 124 - 124 aa - 124 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9211+/-0.000722; mu= 7.0487+/- 0.043
 mean_var=83.6253+/-16.755, 0's: 0 Z-trim(110.3): 106  B-trim: 167 in 2/49
 Lambda= 0.140251
 statistics sampled from 11386 (11526) to 11386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.354), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS11032.1 TAX1BP3 gene_id:30851|Hs108|chr17      ( 124)  804 171.7   1e-43
CCDS73940.1 TAX1BP3 gene_id:30851|Hs108|chr17      (  98)  355 80.8 1.9e-16


>>CCDS11032.1 TAX1BP3 gene_id:30851|Hs108|chr17           (124 aa)
 initn: 804 init1: 804 opt: 804  Z-score: 898.4  bits: 171.7 E(32554): 1e-43
Smith-Waterman score: 804; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)

               10        20        30        40        50        60
pF1KE2 MSYIPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSYIPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQ
               70        80        90       100       110       120

           
pF1KE2 SMLS
       ::::
CCDS11 SMLS
           

>>CCDS73940.1 TAX1BP3 gene_id:30851|Hs108|chr17           (98 aa)
 initn: 355 init1: 355 opt: 355  Z-score: 408.9  bits: 80.8 E(32554): 1.9e-16
Smith-Waterman score: 575; 79.0% identity (79.0% similar) in 124 aa overlap (1-124:1-98)

               10        20        30        40        50        60
pF1KE2 MSYIPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS73 MSYIPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDK-------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE2 SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQ
                          :::::::::::::::::::::::::::::::::::::::::
CCDS73 -------------------VNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQ
                               60        70        80        90    

           
pF1KE2 SMLS
       ::::
CCDS73 SMLS
           




124 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:00:49 2016 done: Sun Nov  6 14:00:49 2016
 Total Scan time:  1.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]