FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2166, 353 aa
  1>>>pF1KE2166 353 - 353 aa - 353 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7095+/-0.00074; mu= 10.2931+/- 0.045
 mean_var=95.4569+/-19.083, 0's: 0 Z-trim(112.0): 6  B-trim: 80 in 2/48
 Lambda= 0.131272
 statistics sampled from 12808 (12811) to 12808 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.394), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS14041.1 A4GALT gene_id:53947|Hs108|chr22       ( 353) 2474 478.2 4.4e-135
CCDS3097.1 A4GNT gene_id:51146|Hs108|chr3          ( 340)  718 145.7 5.5e-35


>>CCDS14041.1 A4GALT gene_id:53947|Hs108|chr22            (353 aa)
 initn: 2474 init1: 2474 opt: 2474  Z-score: 2538.6  bits: 478.2 E(32554): 4.4e-135
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)

               10        20        30        40        50        60
pF1KE2 MSKPPDLLLRLLRGAPRQRVCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSKPPDLLLRLLRGAPRQRVCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 CPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 NASLPRHLGISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NASLPRHLGISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 YNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDIN
              250       260       270       280       290       300

              310       320       330       340       350   
pF1KE2 PEELPRLLSATYAVHVWNKKSQGTRFEATSRALLAQLHARYCPTTHEAMKMYL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PEELPRLLSATYAVHVWNKKSQGTRFEATSRALLAQLHARYCPTTHEAMKMYL
              310       320       330       340       350   

>>CCDS3097.1 A4GNT gene_id:51146|Hs108|chr3               (340 aa)
 initn: 599 init1: 254 opt: 718  Z-score: 741.6  bits: 145.7 E(32554): 5.5e-35
Smith-Waterman score: 718; 38.4% identity (66.7% similar) in 315 aa overlap (50-349:18-323)

      20        30        40        50        60        70         
pF1KE2 VCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIPCPTLTPPTPPSHGPTPG--
                                     : ::..  .  :  .  :.  ::    .  
CCDS30              MRKELQLSLSVTLLLVCGFLYQFTLKSSC-LFCLPSFKSHQGLEALL
                            10        20         30        40      

            80        90       100       110       120             
pF1KE2 ----NIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG-----NASLPRHL
           .: :::::.: .:  :  :::::::. .::  :. .::::  .     :.. :   
CCDS30 SHRRGIVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYP---
         50        60        70        80        90       100      

      130       140       150       160       170       180        
pF1KE2 GISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGG
       ..:.:: . :: ..:::...:..:::: .::  ...  :   : . :::::.:..::.::
CCDS30 AFSFLSAIDNVFLFPLDMKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGG
           110       120       130       140       150       160   

      190       200       210        220       230       240       
pF1KE2 IYLDTDFIVLKNLRNLTNVLGTQ-SRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWG
       ::.::: : .. . .  : :..: :::  :: : .:  .: :.  ::..::.:::. :::
CCDS30 IYMDTDVISIRPIPE-ENFLAAQASRYSSNGIF-GFLPHHPFLWECMENFVEHYNSAIWG
           170        180       190        200       210       220 

       250       260       270         280       290       300     
pF1KE2 HQGPQLLTRVFKKWCSIRSLAESRA--CRGVTTLPPEAFYPIPWQDWKKYFEDINPEELP
       .:::.:.::... ::..... :     : ... : :. :::: ...:..:.:  . :  :
CCDS30 NQGPELMTRMLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTE--P
             230       240       250       260       270           

         310       320        330       340       350              
pF1KE2 RLLSATYAVHVWNKKSQ-GTRFEATSRALLAQLHARYCPTTHEAMKMYL           
        . ...::.:.::. .: :      : .:. .:. ..:: :.. .               
CCDS30 SF-NVSYALHLWNHMNQEGRAVIRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPG
     280        290       300       310       320       330        

CCDS30 NK
      340




353 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:48:18 2016 done: Sun Nov  6 22:48:18 2016
 Total Scan time:  2.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]