FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2164, 292 aa
  1>>>pF1KE2164 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7283+/-0.000881; mu= 5.4907+/- 0.053
 mean_var=162.4586+/-33.009, 0's: 0 Z-trim(112.1): 42  B-trim: 544 in 1/52
 Lambda= 0.100624
 statistics sampled from 12859 (12900) to 12859 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.396), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS4348.1 TTC1 gene_id:7265|Hs108|chr5            ( 292) 1926 291.0 7.1e-79


>>CCDS4348.1 TTC1 gene_id:7265|Hs108|chr5                 (292 aa)
 initn: 1926 init1: 1926 opt: 1926  Z-score: 1529.6  bits: 291.0 E(32554): 7.1e-79
Smith-Waterman score: 1926; 99.7% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KE2 MGEKSENCGVPEDLLNGLKVTDTQEAECAGPPVPDPKNQHSQSKLLRDDEAHLQEDQGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGEKSENCGVPEDLLNGLKVTDTQEAECAGPPVPDPKNQHSQSKLLRDDEAHLQEDQGEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ECFHDCSASFEEEPGADKVENKSNEDVNSSELDEEYLIELKKNMSDEEKQKRREESTRLK
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS43 ECFHDCSASFEEEPGADKVENKSNEDVNSSELDEEYLIELEKNMSDEEKQKRREESTRLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 EEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDCSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDCSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 AIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERN
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KE2 ERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR
              250       260       270       280       290  




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:58:13 2016 done: Mon Nov  7 02:58:14 2016
 Total Scan time:  2.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]