FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2161, 121 aa
  1>>>pF1KE2161 121 - 121 aa - 121 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1913+/-0.000526; mu= 11.7507+/- 0.032
 mean_var=66.2705+/-12.978, 0's: 0 Z-trim(114.5): 2  B-trim: 0 in 0/51
 Lambda= 0.157548
 statistics sampled from 15040 (15042) to 15040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.462), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS8928.1 TAC3 gene_id:6866|Hs108|chr12           ( 121)  801 189.5 4.2e-49
CCDS53803.1 TAC3 gene_id:6866|Hs108|chr12          ( 103)  509 123.1 3.5e-29


>>CCDS8928.1 TAC3 gene_id:6866|Hs108|chr12                (121 aa)
 initn: 801 init1: 801 opt: 801  Z-score: 995.0  bits: 189.5 E(32554): 4.2e-49
Smith-Waterman score: 801; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KE2 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA
               70        80        90       100       110       120

        
pF1KE2 E
       :
CCDS89 E
        

>>CCDS53803.1 TAC3 gene_id:6866|Hs108|chr12               (103 aa)
 initn: 506 init1: 506 opt: 509  Z-score: 637.3  bits: 123.1 E(32554): 3.5e-29
Smith-Waterman score: 618; 84.3% identity (85.1% similar) in 121 aa overlap (1-121:1-103)

               10        20        30        40        50        60
pF1KE2 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA
       :::::::::::::::::::.                  ::::::::::::::::::::::
CCDS53 LKALSQASTDPKESTSPEKH------------------SPTDVNQENVPSFGILKYPPRA
               70        80                          90       100  

        
pF1KE2 E
       :
CCDS53 E
        




121 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:24:21 2016 done: Sun Nov  6 22:24:21 2016
 Total Scan time:  1.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]