Result of FASTA (omim) for
pFN21AE2160
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2160, 225 aa
1>>>pF1KE2160 225 - 225 aa - 225 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0082+/-0.000401; mu= 15.8605+/- 0.025
mean_var=64.7555+/-12.970, 0's: 0 Z-trim(111.6): 51 B-trim: 1108 in 1/48
Lambda= 0.159381
statistics sampled from 20252 (20303) to 20252 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.238), width: 16
Scan time: 5.950
The best scores are: opt bits E(85289)
NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens] ( 225) 1499 353.3 1.9e-97
NP_036263 (OMIM: 617005) claudin-17 [Homo sapiens] ( 224) 905 216.7 2.4e-56
NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens] ( 220) 694 168.2 9.7e-42
NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens] ( 217) 685 166.1 4e-41
NP_067018 (OMIM: 615798) claudin-6 precursor [Homo ( 220) 671 162.9 3.8e-40
NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens] ( 209) 655 159.2 4.7e-39
XP_016884418 (OMIM: 602101) PREDICTED: claudin-5 i ( 303) 630 153.6 3.4e-37
NP_001124333 (OMIM: 602101) claudin-5 [Homo sapien ( 303) 630 153.6 3.4e-37
XP_016884419 (OMIM: 602101) PREDICTED: claudin-5 i ( 303) 630 153.6 3.4e-37
NP_003268 (OMIM: 602101) claudin-5 [Homo sapiens] ( 303) 630 153.6 3.4e-37
NP_001298 (OMIM: 609131) claudin-7 isoform 1 precu ( 211) 624 152.1 6.6e-37
NP_001171951 (OMIM: 609131) claudin-7 isoform 1 pr ( 211) 624 152.1 6.6e-37
NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sa ( 211) 588 143.8 2e-34
NP_652763 (OMIM: 605608,614035) claudin-14 [Homo s ( 239) 552 135.6 7e-32
NP_001139551 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 552 135.6 7e-32
NP_036262 (OMIM: 605608,614035) claudin-14 [Homo s ( 239) 552 135.6 7e-32
NP_001139549 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 552 135.6 7e-32
NP_001139550 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 552 135.6 7e-32
NP_001116867 (OMIM: 248190,610036) claudin-19 isof ( 211) 549 134.9 1e-31
NP_683763 (OMIM: 248190,610036) claudin-19 isoform ( 224) 549 134.9 1.1e-31
NP_001164566 (OMIM: 300520) claudin-2 [Homo sapien ( 230) 503 124.3 1.7e-28
NP_065117 (OMIM: 300520) claudin-2 [Homo sapiens] ( 230) 503 124.3 1.7e-28
NP_001164563 (OMIM: 300520) claudin-2 [Homo sapien ( 230) 503 124.3 1.7e-28
NP_001171952 (OMIM: 609131) claudin-7 isoform 2 pr ( 145) 452 112.5 3.9e-25
NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens] ( 228) 450 112.1 7.7e-25
NP_001172009 (OMIM: 615778) claudin-15 [Homo sapie ( 228) 450 112.1 7.7e-25
NP_001172046 (OMIM: 248190,610036) claudin-19 isof ( 218) 417 104.5 1.4e-22
NP_001002026 (OMIM: 609210) claudin-18 isoform 2 [ ( 261) 338 86.4 4.9e-17
NP_057453 (OMIM: 609210) claudin-18 isoform 1 prec ( 261) 335 85.7 7.9e-17
NP_005593 (OMIM: 601326) claudin-11 isoform 1 [Hom ( 207) 253 66.8 3.1e-11
NP_006571 (OMIM: 248250,603959) claudin-16 [Homo s ( 305) 229 61.4 1.9e-09
NP_919260 (OMIM: 609203) claudin-23 [Homo sapiens] ( 292) 224 60.2 4.1e-09
NP_001171985 (OMIM: 601326) claudin-11 isoform 2 p ( 123) 154 43.9 0.00015
>>NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens] (225 aa)
initn: 1499 init1: 1499 opt: 1499 Z-score: 1870.6 bits: 353.3 E(85289): 1.9e-97
Smith-Waterman score: 1499; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA
130 140 150 160 170 180
190 200 210 220
pF1KE2 LFCCVFCCNEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV
:::::::::::::::::::::::::::::::::::::::::::::
NP_955 LFCCVFCCNEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV
190 200 210 220
>>NP_036263 (OMIM: 617005) claudin-17 [Homo sapiens] (224 aa)
initn: 954 init1: 901 opt: 905 Z-score: 1132.4 bits: 216.7 E(85289): 2.4e-56
Smith-Waterman score: 905; 57.9% identity (86.4% similar) in 214 aa overlap (1-214:1-210)
10 20 30 40 50 60
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI
:: . :.:::: :: .:::::.:.:..::::::::. .::.::: .::::::::.::: .
NP_036 MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL
:.:::.:.::::: : :..::.:::.: ..:..:....: ::: ..:::.::..::..:
NP_036 RLQCKFYSSLLALPPALETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA
:.:..::.::. :::::::.:: ::::::: ....:::::: ::.:::..: ::..::.
NP_036 TSGVLFILTGIFVLIPVSWTANIIIRDFYNPAIHIGQKRELGAALFLGWASAAVLFIGGG
130 140 150 160 170 180
190 200 210 220
pF1KE2 LFCCVFCCNEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV
:.: :::.:...::: .:..:. :: :.
NP_036 LLCGFCCCNRKKQGYRYPVPGYRVP----HTDKRRNTTMLSKTSTSYV
190 200 210 220
>>NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens] (220 aa)
initn: 396 init1: 396 opt: 694 Z-score: 870.3 bits: 168.2 E(85289): 9.7e-42
Smith-Waterman score: 694; 44.8% identity (78.0% similar) in 223 aa overlap (3-225:2-220)
10 20 30 40 50 60
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI
. .:::.: :. .: .::.. ..:.::::::: .::.. .:.::::::::: :..
NP_001 MSMGLEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTG
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL
.::::.::::::: ::::::.:. .: ... .....:..: .:: :. :. .::.: .
NP_001 QMQCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDT-AKAKITI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE2 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA
.::..:.......:.:::: ::.::::::: .: :::::.: .::.::..: . ..:::
NP_001 VAGVLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGA
120 130 140 150 160 170
190 200 210 220
pF1KE2 LFCCVFCCNEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV
:.:: : . ..: . . .. .: : . . :.:..::
NP_001 LLCC--SCPPREKKYTATKVVY-SAPRSTGPGASLGTGYDRKDYV
180 190 200 210 220
>>NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens] (217 aa)
initn: 407 init1: 388 opt: 685 Z-score: 859.2 bits: 166.1 E(85289): 4e-41
Smith-Waterman score: 685; 51.2% identity (78.3% similar) in 207 aa overlap (1-201:1-204)
10 20 30 40 50 60
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI
::. .::. :. :. .: .::.. ..: :.:.::: :.::: . ::::::.:: :..
NP_066 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL
.::::.::::::: ::::::.: : ....:....:: : .:: :. : : .::.:.:
NP_066 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVED-EGAKARIVL
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA
:::.:....:..::::: :.:.:::.:::: .: : ::::: .:::::..: .:..::.
NP_066 TAGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGG
120 130 140 150 160 170
190 200 210 220
pF1KE2 LFCCVFCCN----EKSSSYR--YSIPSHRTTQKSYHTGKKSPSVYSRSQYV
:.::. : :. . : :::::
NP_066 LLCCT--CPPPQVERPRGPRLGYSIPSRSGASGLDKRDYV
180 190 200 210
>>NP_067018 (OMIM: 615798) claudin-6 precursor [Homo sap (220 aa)
initn: 357 init1: 330 opt: 671 Z-score: 841.8 bits: 162.9 E(85289): 3.8e-40
Smith-Waterman score: 671; 44.9% identity (76.0% similar) in 225 aa overlap (1-225:1-220)
10 20 30 40 50 60
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI
::. ...: :. : .: :. .. ..:.:.:.::: :.::: . ::::::.:: :..
NP_067 MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL
.::::.::::::: ::::::.: : ......... . : ::: :. .... ::...:
NP_067 QMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEKDS-KARLVL
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA
:.::.:.:.:...:::: :.:.:::::::: .: ::::::: .:::::... .:..::.
NP_067 TSGIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKRELGASLYLGWAASGLLLLGGG
120 130 140 150 160 170
190 200 210 220
pF1KE2 LFCCVFCCNEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV
:.::. : . :.. . . . :. . : :: : ..::
NP_067 LLCCT-CPSGGSQGPSHYMARYSTSAPAISRG---PSEYPTKNYV
180 190 200 210 220
>>NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens] (209 aa)
initn: 396 init1: 396 opt: 655 Z-score: 822.2 bits: 159.2 E(85289): 4.7e-39
Smith-Waterman score: 655; 45.3% identity (80.1% similar) in 201 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI
::. .:.. :. :. .: .... ..:.:::.::: .:::. ...::::::::: :..
NP_001 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL
.::::.::::::: ::::::.:. . ... :. .....: ::: : : :..::. ..
NP_001 QMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLED-ESAKAKTMI
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA
.::..:...:..:..::::.:. ::.:::: .: .::::.: .::.::... .:..::.
NP_001 VAGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGG
120 130 140 150 160 170
190 200 210 220
pF1KE2 LFCCVFCC---NEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV
:.:: : ..: : .::
NP_001 LLCC--NCPPRTDKPYSAKYSAARSAAASNYV
180 190 200
>>XP_016884418 (OMIM: 602101) PREDICTED: claudin-5 isofo (303 aa)
initn: 614 init1: 359 opt: 630 Z-score: 788.8 bits: 153.6 E(85289): 3.4e-37
Smith-Waterman score: 630; 42.3% identity (76.1% similar) in 213 aa overlap (1-209:86-297)
10 20 30
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQW
:.. :::: :: : :: : . . .:.:
XP_016 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE2 RVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCKIYDSLLALSPDLQAARGLMCAASVM
.:.::...:::. .. :.::::.:: :.. .::::.:::.:::: ..::::.: .: ..
XP_016 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE2 SFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGIIFIITGMVVLIPVSWVANAIIRDFYN
.:.:..... : .:: :.. . .::.. ::.:..... :...:.:. : :: ..:.::.
XP_016 AFVALFVTLAGAQCTTCVAPGP-AKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYD
180 190 200 210 220 230
160 170 180 190 200
pF1KE2 SIVNVAQKRELGEALYLGWTTALVLIVGGALFCC--VFCCNEKSSSY--RYSIPSHRTTQ
: :.:: ::: :::.::... .:.::: :.:: : .. . :. .:: : . :.
XP_016 PSVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTAT
240 250 260 270 280 290
210 220
pF1KE2 KSYHTGKKSPSVYSRSQYV
.:
XP_016 GDYDKKNYV
300
>>NP_001124333 (OMIM: 602101) claudin-5 [Homo sapiens] (303 aa)
initn: 614 init1: 359 opt: 630 Z-score: 788.8 bits: 153.6 E(85289): 3.4e-37
Smith-Waterman score: 630; 42.3% identity (76.1% similar) in 213 aa overlap (1-209:86-297)
10 20 30
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQW
:.. :::: :: : :: : . . .:.:
NP_001 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE2 RVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCKIYDSLLALSPDLQAARGLMCAASVM
.:.::...:::. .. :.::::.:: :.. .::::.:::.:::: ..::::.: .: ..
NP_001 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE2 SFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGIIFIITGMVVLIPVSWVANAIIRDFYN
.:.:..... : .:: :.. . .::.. ::.:..... :...:.:. : :: ..:.::.
NP_001 AFVALFVTLAGAQCTTCVAPGP-AKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYD
180 190 200 210 220 230
160 170 180 190 200
pF1KE2 SIVNVAQKRELGEALYLGWTTALVLIVGGALFCC--VFCCNEKSSSY--RYSIPSHRTTQ
: :.:: ::: :::.::... .:.::: :.:: : .. . :. .:: : . :.
NP_001 PSVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTAT
240 250 260 270 280 290
210 220
pF1KE2 KSYHTGKKSPSVYSRSQYV
.:
NP_001 GDYDKKNYV
300
>>XP_016884419 (OMIM: 602101) PREDICTED: claudin-5 isofo (303 aa)
initn: 614 init1: 359 opt: 630 Z-score: 788.8 bits: 153.6 E(85289): 3.4e-37
Smith-Waterman score: 630; 42.3% identity (76.1% similar) in 213 aa overlap (1-209:86-297)
10 20 30
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQW
:.. :::: :: : :: : . . .:.:
XP_016 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE2 RVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCKIYDSLLALSPDLQAARGLMCAASVM
.:.::...:::. .. :.::::.:: :.. .::::.:::.:::: ..::::.: .: ..
XP_016 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE2 SFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGIIFIITGMVVLIPVSWVANAIIRDFYN
.:.:..... : .:: :.. . .::.. ::.:..... :...:.:. : :: ..:.::.
XP_016 AFVALFVTLAGAQCTTCVAPGP-AKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYD
180 190 200 210 220 230
160 170 180 190 200
pF1KE2 SIVNVAQKRELGEALYLGWTTALVLIVGGALFCC--VFCCNEKSSSY--RYSIPSHRTTQ
: :.:: ::: :::.::... .:.::: :.:: : .. . :. .:: : . :.
XP_016 PSVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTAT
240 250 260 270 280 290
210 220
pF1KE2 KSYHTGKKSPSVYSRSQYV
.:
XP_016 GDYDKKNYV
300
>>NP_003268 (OMIM: 602101) claudin-5 [Homo sapiens] (303 aa)
initn: 614 init1: 359 opt: 630 Z-score: 788.8 bits: 153.6 E(85289): 3.4e-37
Smith-Waterman score: 630; 42.3% identity (76.1% similar) in 213 aa overlap (1-209:86-297)
10 20 30
pF1KE2 MATHALEIAGLFLGGVGMVGTVAVTVMPQW
:.. :::: :: : :: : . . .:.:
NP_003 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE2 RVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCKIYDSLLALSPDLQAARGLMCAASVM
.:.::...:::. .. :.::::.:: :.. .::::.:::.:::: ..::::.: .: ..
NP_003 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE2 SFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGIIFIITGMVVLIPVSWVANAIIRDFYN
.:.:..... : .:: :.. . .::.. ::.:..... :...:.:. : :: ..:.::.
NP_003 AFVALFVTLAGAQCTTCVAPGP-AKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYD
180 190 200 210 220 230
160 170 180 190 200
pF1KE2 SIVNVAQKRELGEALYLGWTTALVLIVGGALFCC--VFCCNEKSSSY--RYSIPSHRTTQ
: :.:: ::: :::.::... .:.::: :.:: : .. . :. .:: : . :.
NP_003 PSVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTAT
240 250 260 270 280 290
210 220
pF1KE2 KSYHTGKKSPSVYSRSQYV
.:
NP_003 GDYDKKNYV
300
225 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:42:15 2016 done: Mon Nov 7 00:42:16 2016
Total Scan time: 5.950 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]