FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2147, 124 aa
  1>>>pF1KE2147 124 - 124 aa - 124 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8489+/-0.000289; mu= 12.9362+/- 0.018
 mean_var=61.4394+/-12.968, 0's: 0 Z-trim(117.7): 15  B-trim: 1403 in 1/57
 Lambda= 0.163625
 statistics sampled from 30003 (30017) to 30003 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.352), width:  16
 Scan time:  4.720

The best scores are:                                      opt bits E(85289)
NP_004544 (OMIM: 252010,603848) NADH dehydrogenase ( 124)  858 210.2 6.9e-55


>>NP_004544 (OMIM: 252010,603848) NADH dehydrogenase [ub  (124 aa)
 initn: 858 init1: 858 opt: 858  Z-score: 1106.4  bits: 210.2 E(85289): 6.9e-55
Smith-Waterman score: 858; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)

               10        20        30        40        50        60
pF1KE2 MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFR
               70        80        90       100       110       120

           
pF1KE2 QHHH
       ::::
NP_004 QHHH
           




124 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:54:24 2016 done: Mon Nov  7 15:54:24 2016
 Total Scan time:  4.720 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]