Result of FASTA (omim) for
pFN21AE2090
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2090, 769 aa
1>>>pF1KE2090 769 - 769 aa - 769 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5885+/-0.000492; mu= 4.3112+/- 0.031
mean_var=157.3275+/-31.700, 0's: 0 Z-trim(113.0): 56 B-trim: 0 in 0/56
Lambda= 0.102252
statistics sampled from 22103 (22128) to 22103 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.259), width: 16
Scan time: 11.220
The best scores are: opt bits E(85289)
NP_060842 (OMIM: 615354) ligand-dependent nuclear ( 769) 4890 734.3 4.7e-211
XP_005271086 (OMIM: 615354) PREDICTED: ligand-depe ( 768) 4871 731.5 3.2e-210
XP_011540070 (OMIM: 615354) PREDICTED: ligand-depe ( 742) 4706 707.1 6.7e-203
XP_016857257 (OMIM: 615354) PREDICTED: ligand-depe ( 741) 4687 704.3 4.7e-202
XP_016857258 (OMIM: 615354) PREDICTED: ligand-depe ( 639) 3958 596.7 9.7e-170
NP_001006946 (OMIM: 615354) ligand-dependent nucle ( 233) 1495 233.2 9.5e-61
>>NP_060842 (OMIM: 615354) ligand-dependent nuclear rece (769 aa)
initn: 4890 init1: 4890 opt: 4890 Z-score: 3910.2 bits: 734.3 E(85289): 4.7e-211
Smith-Waterman score: 4890; 100.0% identity (100.0% similar) in 769 aa overlap (1-769:1-769)
10 20 30 40 50 60
pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
670 680 690 700 710 720
730 740 750 760
pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
730 740 750 760
>>XP_005271086 (OMIM: 615354) PREDICTED: ligand-dependen (768 aa)
initn: 3958 init1: 3958 opt: 4871 Z-score: 3895.0 bits: 731.5 E(85289): 3.2e-210
Smith-Waterman score: 4871; 99.9% identity (99.9% similar) in 769 aa overlap (1-769:1-768)
10 20 30 40 50 60
pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_005 SSLVKSGTYKETEFMVKEGERKQ-NFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
610 620 630 640 650
670 680 690 700 710 720
pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
660 670 680 690 700 710
730 740 750 760
pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
720 730 740 750 760
>>XP_011540070 (OMIM: 615354) PREDICTED: ligand-dependen (742 aa)
initn: 4706 init1: 4706 opt: 4706 Z-score: 3763.7 bits: 707.1 E(85289): 6.7e-203
Smith-Waterman score: 4706; 100.0% identity (100.0% similar) in 742 aa overlap (28-769:1-742)
10 20 30 40 50 60
pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
:::::::::::::::::::::::::::::::::
XP_011 MYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
10 20 30
70 80 90 100 110 120
pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
520 530 540 550 560 570
610 620 630 640 650 660
pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
580 590 600 610 620 630
670 680 690 700 710 720
pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
640 650 660 670 680 690
730 740 750 760
pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
700 710 720 730 740
>>XP_016857257 (OMIM: 615354) PREDICTED: ligand-dependen (741 aa)
initn: 3774 init1: 3774 opt: 4687 Z-score: 3748.6 bits: 704.3 E(85289): 4.7e-202
Smith-Waterman score: 4687; 99.9% identity (99.9% similar) in 742 aa overlap (28-769:1-741)
10 20 30 40 50 60
pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
:::::::::::::::::::::::::::::::::
XP_016 MYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
10 20 30
70 80 90 100 110 120
pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
520 530 540 550 560 570
610 620 630 640 650 660
pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_016 SSLVKSGTYKETEFMVKEGERKQ-NFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
580 590 600 610 620 630
670 680 690 700 710 720
pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
640 650 660 670 680 690
730 740 750 760
pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
700 710 720 730 740
>>XP_016857258 (OMIM: 615354) PREDICTED: ligand-dependen (639 aa)
initn: 3958 init1: 3958 opt: 3958 Z-score: 3168.4 bits: 596.7 E(85289): 9.7e-170
Smith-Waterman score: 3958; 100.0% identity (100.0% similar) in 623 aa overlap (1-623:1-623)
10 20 30 40 50 60
pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
:::::::::::::::::::::::
XP_016 SSLVKSGTYKETEFMVKEGERKQVAVRGEDLAIYRRREK
610 620 630
>>NP_001006946 (OMIM: 615354) ligand-dependent nuclear r (233 aa)
initn: 1495 init1: 1495 opt: 1495 Z-score: 1211.7 bits: 233.2 E(85289): 9.5e-61
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 233 aa overlap (537-769:1-233)
510 520 530 540 550 560
pF1KE2 IEKISSSVDATTVTSQQCVFRDQEPKIHNEMASTSDKGAQGRNDKKDSQGRSNKALHLKS
::::::::::::::::::::::::::::::
NP_001 MASTSDKGAQGRNDKKDSQGRSNKALHLKS
10 20 30
570 580 590 600 610 620
pF1KE2 DAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNF
40 50 60 70 80 90
630 640 650 660 670 680
pF1KE2 DKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSK
100 110 120 130 140 150
690 700 710 720 730 740
pF1KE2 TRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR
160 170 180 190 200 210
750 760
pF1KE2 RLKQVLREKEAALEEMRKKMHQK
:::::::::::::::::::::::
NP_001 RLKQVLREKEAALEEMRKKMHQK
220 230
769 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:09:39 2016 done: Mon Nov 7 18:09:41 2016
Total Scan time: 11.220 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]