FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2090, 769 aa
  1>>>pF1KE2090 769 - 769 aa - 769 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5529+/-0.00116; mu= 9.9514+/- 0.069
 mean_var=121.1814+/-23.907, 0's: 0 Z-trim(105.4): 37  B-trim: 5 in 1/49
 Lambda= 0.116508
 statistics sampled from 8385 (8400) to 8385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.258), width:  16
 Scan time:  3.950

The best scores are:                                      opt bits E(32554)
CCDS30800.1 LRIF1 gene_id:55791|Hs108|chr1         ( 769) 4890 833.8       0
CCDS41366.1 LRIF1 gene_id:55791|Hs108|chr1         ( 233) 1495 262.9 4.1e-70


>>CCDS30800.1 LRIF1 gene_id:55791|Hs108|chr1              (769 aa)
 initn: 4890 init1: 4890 opt: 4890  Z-score: 4448.1  bits: 833.8 E(32554):    0
Smith-Waterman score: 4890; 100.0% identity (100.0% similar) in 769 aa overlap (1-769:1-769)

               10        20        30        40        50        60
pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF
              670       680       690       700       710       720

              730       740       750       760         
pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK
              730       740       750       760         

>>CCDS41366.1 LRIF1 gene_id:55791|Hs108|chr1              (233 aa)
 initn: 1495 init1: 1495 opt: 1495  Z-score: 1372.2  bits: 262.9 E(32554): 4.1e-70
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 233 aa overlap (537-769:1-233)

        510       520       530       540       550       560      
pF1KE2 IEKISSSVDATTVTSQQCVFRDQEPKIHNEMASTSDKGAQGRNDKKDSQGRSNKALHLKS
                                     ::::::::::::::::::::::::::::::
CCDS41                               MASTSDKGAQGRNDKKDSQGRSNKALHLKS
                                             10        20        30

        570       580       590       600       610       620      
pF1KE2 DAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNF
               40        50        60        70        80        90

        630       640       650       660       670       680      
pF1KE2 DKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSK
              100       110       120       130       140       150

        690       700       710       720       730       740      
pF1KE2 TRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR
              160       170       180       190       200       210

        750       760         
pF1KE2 RLKQVLREKEAALEEMRKKMHQK
       :::::::::::::::::::::::
CCDS41 RLKQVLREKEAALEEMRKKMHQK
              220       230   




769 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:09:38 2016 done: Mon Nov  7 18:09:39 2016
 Total Scan time:  3.950 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]