FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2089, 764 aa
  1>>>pF1KE2089 764 - 764 aa - 764 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3663+/-0.000988; mu= 14.9785+/- 0.059
 mean_var=91.8109+/-18.840, 0's: 0 Z-trim(105.0): 57  B-trim: 3 in 1/52
 Lambda= 0.133853
 statistics sampled from 8131 (8172) to 8131 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.251), width:  16
 Scan time:  3.200

The best scores are:                                      opt bits E(32554)
CCDS1474.1 PIGR gene_id:5284|Hs108|chr1            ( 764) 5079 991.7       0
CCDS53468.1 FCAMR gene_id:83953|Hs108|chr1         ( 577)  344 77.3 7.7e-14
CCDS41460.1 FCAMR gene_id:83953|Hs108|chr1         ( 265)  327 73.8 3.9e-13


>>CCDS1474.1 PIGR gene_id:5284|Hs108|chr1                 (764 aa)
 initn: 5079 init1: 5079 opt: 5079  Z-score: 5301.7  bits: 991.7 E(32554):    0
Smith-Waterman score: 5079; 100.0% identity (100.0% similar) in 764 aa overlap (1-764:1-764)

               10        20        30        40        50        60
pF1KE2 MLLFVLTCLLAVFPAISTKSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MLLFVLTCLLAVFPAISTKSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 GVAGGSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GVAGGSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 NGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 WYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 DPRLFAEEKAVADTRDQADGSRASVDSGSSEEQGGSSRALVSTLVPLGLVLAVGAVAVGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DPRLFAEEKAVADTRDQADGSRASVDSGSSEEQGGSSRALVSTLVPLGLVLAVGAVAVGV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 ARARHRKNVDRVSIRSYRTDISMSDFENSREFGANDNMGASSITQETSLGGKEEFVATTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ARARHRKNVDRVSIRSYRTDISMSDFENSREFGANDNMGASSITQETSLGGKEEFVATTE
              670       680       690       700       710       720

              730       740       750       760    
pF1KE2 STTETKEPKKAKRSSKEEAEMAYKDFLLQSSTVAAEAQDGPQEA
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS14 STTETKEPKKAKRSSKEEAEMAYKDFLLQSSTVAAEAQDGPQEA
              730       740       750       760    

>>CCDS53468.1 FCAMR gene_id:83953|Hs108|chr1              (577 aa)
 initn: 283 init1: 202 opt: 344  Z-score: 361.9  bits: 77.3 E(32554): 7.7e-14
Smith-Waterman score: 344; 45.9% identity (70.6% similar) in 109 aa overlap (24-131:111-219)

                      10        20        30        40        50   
pF1KE2        MLLFVLTCLLAVFPAISTKSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRK
                                     : . :..  :..:.: :.: :.::::: ::
CCDS53 THLRAMGTLRPSSPLCWREESSFAAPNSLKGSRLVSGEPGGAVTIQCHYAPSSVNRHQRK
               90       100       110       120       130       140

            60         70        80        90       100       110  
pF1KE2 YWCRQGA-RGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGL
       :::: :  :  : :..:.. :.  .:  :. ::.::. : ::: ..::: :: : : ::.
CCDS53 YWCRLGPPRWICQTIVSTNQYTHHRYRDRVALTDFPQRGLFVVRLSQLSPDDIGCYLCGI
              150       160       170       180       190       200

            120       130       140       150       160       170  
pF1KE2 GINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLY
       : ..  : ....: .: ::                                         
CCDS53 GSENNMLFLSMNLTISAGPASTLPTATPAAGELTMRSYGTASPVANRWTPGTTQTLGQGT
              210       220       230       240       250       260

>>CCDS41460.1 FCAMR gene_id:83953|Hs108|chr1              (265 aa)
 initn: 324 init1: 127 opt: 327  Z-score: 349.3  bits: 73.8 E(32554): 3.9e-13
Smith-Waterman score: 327; 45.3% identity (70.8% similar) in 106 aa overlap (24-128:111-216)

                      10        20        30        40        50   
pF1KE2        MLLFVLTCLLAVFPAISTKSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRK
                                     : . :..  :..:.: :.: :.::::: ::
CCDS41 THLRAMGTLRPSSPLCWREESSFAAPNSLKGSRLVSGEPGGAVTIQCHYAPSSVNRHQRK
               90       100       110       120       130       140

            60         70        80        90       100       110  
pF1KE2 YWCRQGA-RGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGL
       :::: :  :  : :..:.. :.  .:  :. ::.::. : ::: ..::: :: : : ::.
CCDS41 YWCRLGPPRWICQTIVSTNQYTHHRYRDRVALTDFPQRGLFVVRLSQLSPDDIGCYLCGI
              150       160       170       180       190       200

            120       130       140       150       160       170  
pF1KE2 GINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLY
       : ..  : ....: .:                                            
CCDS41 GSENNMLFLSMNLTISAVLFQKMKAALGPWLLSLPCWPCLCLWLWFYCKGSSGEGGPLRR
              210       220       230       240       250       260




764 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:40:57 2016 done: Sun Nov  6 18:40:57 2016
 Total Scan time:  3.200 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]