Result of FASTA (ccds) for
pFN21AE2073
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2073, 736 aa
1>>>pF1KE2073 736 - 736 aa - 736 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4475+/-0.00151; mu= 8.5809+/- 0.089
mean_var=136.6688+/-28.389, 0's: 0 Z-trim(102.0): 147 B-trim: 43 in 2/48
Lambda= 0.109708
statistics sampled from 6579 (6744) to 6579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.556), E-opt: 0.2 (0.207), width: 16
Scan time: 2.150
The best scores are: opt bits E(32554)
CCDS5624.1 KRIT1 gene_id:889|Hs108|chr7 ( 736) 4916 791.1 0
CCDS34679.1 KRIT1 gene_id:889|Hs108|chr7 ( 688) 2710 441.9 1.5e-123
>>CCDS5624.1 KRIT1 gene_id:889|Hs108|chr7 (736 aa)
initn: 4916 init1: 4916 opt: 4916 Z-score: 4218.0 bits: 791.1 E(32554): 0
Smith-Waterman score: 4916; 100.0% identity (100.0% similar) in 736 aa overlap (1-736:1-736)
10 20 30 40 50 60
pF1KE2 MGNPENIEDAYVAVIRPKNTASLNSREYRAKSYEILLHEVPIEGQKKKRKKVLLETKLQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGNPENIEDAYVAVIRPKNTASLNSREYRAKSYEILLHEVPIEGQKKKRKKVLLETKLQG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NSEITQGILDYVVETTKPISPANQGIRGKRVVLMKKFPLDGEKMGREASLFIVPSVVKDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NSEITQGILDYVVETTKPISPANQGIRGKRVVLMKKFPLDGEKMGREASLFIVPSVVKDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TKYTYTPGCPIFYCLQDIMRVCSESSTHFATLTARMLIALDKWLDERHAQSHFIPALFRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TKYTYTPGCPIFYCLQDIMRVCSESSTHFATLTARMLIALDKWLDERHAQSHFIPALFRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SPLERIKTNVINPAYATESGQTENSLHMGYSALEIKSKMLALEKADTCIYNPLFGSDLQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SPLERIKTNVINPAYATESGQTENSLHMGYSALEIKSKMLALEKADTCIYNPLFGSDLQY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TNRVDKVVINPYFGLGAPDYSKIQIPKQEKWQRSMSSVTEDKERQWVDDFPLHRSACEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TNRVDKVVINPYFGLGAPDYSKIQIPKQEKWQRSMSSVTEDKERQWVDDFPLHRSACEGD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 SELLSRLLSERFSVNQLDSDHWAPIHYACWYGKVEATRILLEKGKCNPNLLNGQLSSPLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SELLSRLLSERFSVNQLDSDHWAPIHYACWYGKVEATRILLEKGKCNPNLLNGQLSSPLH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 FAAGGGHAEIVQILLNHPETDRHITDQQGRSPLNICEENKQNNWEEAAKLLKEAINKPYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FAAGGGHAEIVQILLNHPETDRHITDQQGRSPLNICEENKQNNWEEAAKLLKEAINKPYE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 KVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQYFTIWICSENLSLQLKPYHKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQYFTIWICSENLSLQLKPYHKP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LQHVRDWPEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LQHVRDWPEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 KGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 ILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 GVNIKGLHLLNMETKALLISLKYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GVNIKGLHLLNMETKALLISLKYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVVK
670 680 690 700 710 720
730
pF1KE2 LLMKLNGQLMPTERNS
::::::::::::::::
CCDS56 LLMKLNGQLMPTERNS
730
>>CCDS34679.1 KRIT1 gene_id:889|Hs108|chr7 (688 aa)
initn: 4546 init1: 2710 opt: 2710 Z-score: 2331.4 bits: 441.9 E(32554): 1.5e-123
Smith-Waterman score: 4454; 93.5% identity (93.5% similar) in 736 aa overlap (1-736:1-688)
10 20 30 40 50 60
pF1KE2 MGNPENIEDAYVAVIRPKNTASLNSREYRAKSYEILLHEVPIEGQKKKRKKVLLETKLQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGNPENIEDAYVAVIRPKNTASLNSREYRAKSYEILLHEVPIEGQKKKRKKVLLETKLQG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NSEITQGILDYVVETTKPISPANQGIRGKRVVLMKKFPLDGEKMGREASLFIVPSVVKDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NSEITQGILDYVVETTKPISPANQGIRGKRVVLMKKFPLDGEKMGREASLFIVPSVVKDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TKYTYTPGCPIFYCLQDIMRVCSESSTHFATLTARMLIALDKWLDERHAQSHFIPALFRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TKYTYTPGCPIFYCLQDIMRVCSESSTHFATLTARMLIALDKWLDERHAQSHFIPALFRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SPLERIKTNVINPAYATESGQTENSLHMGYSALEIKSKMLALEKADTCIYNPLFGSDLQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPLERIKTNVINPAYATESGQTENSLHMGYSALEIKSKMLALEKADTCIYNPLFGSDLQY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 TNRVDKVVINPYFGLGAPDYSKIQIPKQEKWQRSMSSVTEDKERQWVDDFPLHRSACEGD
::::::::::::::::::::::::::::::::::::::::::
CCDS34 TNRVDKVVINPYFGLGAPDYSKIQIPKQEKWQRSMSSVTEDK------------------
250 260 270 280
310 320 330 340 350 360
pF1KE2 SELLSRLLSERFSVNQLDSDHWAPIHYACWYGKVEATRILLEKGKCNPNLLNGQLSSPLH
::::::::::::::::::::::::::::::
CCDS34 ------------------------------YGKVEATRILLEKGKCNPNLLNGQLSSPLH
290 300 310
370 380 390 400 410 420
pF1KE2 FAAGGGHAEIVQILLNHPETDRHITDQQGRSPLNICEENKQNNWEEAAKLLKEAINKPYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FAAGGGHAEIVQILLNHPETDRHITDQQGRSPLNICEENKQNNWEEAAKLLKEAINKPYE
320 330 340 350 360 370
430 440 450 460 470 480
pF1KE2 KVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQYFTIWICSENLSLQLKPYHKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQYFTIWICSENLSLQLKPYHKP
380 390 400 410 420 430
490 500 510 520 530 540
pF1KE2 LQHVRDWPEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LQHVRDWPEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLL
440 450 460 470 480 490
550 560 570 580 590 600
pF1KE2 KGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNR
500 510 520 530 540 550
610 620 630 640 650 660
pF1KE2 ILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYV
560 570 580 590 600 610
670 680 690 700 710 720
pF1KE2 GVNIKGLHLLNMETKALLISLKYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GVNIKGLHLLNMETKALLISLKYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVVK
620 630 640 650 660 670
730
pF1KE2 LLMKLNGQLMPTERNS
::::::::::::::::
CCDS34 LLMKLNGQLMPTERNS
680
736 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:22:27 2016 done: Sun Nov 6 16:22:27 2016
Total Scan time: 2.150 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]