FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2044, 662 aa
  1>>>pF1KE2044 662 - 662 aa - 662 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2228+/-0.000737; mu= 21.4524+/- 0.045
 mean_var=85.4850+/-16.787, 0's: 0 Z-trim(111.1): 35  B-trim: 64 in 1/50
 Lambda= 0.138717
 statistics sampled from 12087 (12115) to 12087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.372), width:  16
 Scan time:  4.140

The best scores are:                                      opt bits E(32554)
CCDS54232.1 IL12RB1 gene_id:3594|Hs108|chr19       ( 662) 4621 934.7       0
CCDS32957.1 IL12RB1 gene_id:3594|Hs108|chr19       ( 381) 2417 493.4 2.4e-139


>>CCDS54232.1 IL12RB1 gene_id:3594|Hs108|chr19            (662 aa)
 initn: 4621 init1: 4621 opt: 4621  Z-score: 4995.8  bits: 934.7 E(32554):    0
Smith-Waterman score: 4621; 100.0% identity (100.0% similar) in 662 aa overlap (1-662:1-662)

               10        20        30        40        50        60
pF1KE2 MEPLVTWVVPLLFLFLLSRQGAACRTSECCFQDPPYPDADSGSASGPRDLRCYRISSDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEPLVTWVVPLLFLFLLSRQGAACRTSECCFQDPPYPDADSGSASGPRDLRCYRISSDRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ECSWQYEGPTAGVSHFLRCCLSSGRCCYFAAGSATRLQFSDQAGVSVLYTVTLWVESWAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ECSWQYEGPTAGVSHFLRCCLSSGRCCYFAAGSATRLQFSDQAGVSVLYTVTLWVESWAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 NQTEKSPEVTLQLYNSVKYEPPLGDIKVSKLAGQLRMEWETPDNQVGAEVQFRHRTPSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NQTEKSPEVTLQLYNSVKYEPPLGDIKVSKLAGQLRMEWETPDNQVGAEVQFRHRTPSSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 WKLGDCGPQDDDTESCLCPLEMNVAQEFQLRRRQLGSQGSSWSKWSSPVCVPPENPPQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WKLGDCGPQDDDTESCLCPLEMNVAQEFQLRRRQLGSQGSSWSKWSSPVCVPPENPPQPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 VRFSVEQLGQDGRRRLTLKEQPTQLELPEGCQGLAPGTEVTYRLQLHMLSCPCKAKATRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VRFSVEQLGQDGRRRLTLKEQPTQLELPEGCQGLAPGTEVTYRLQLHMLSCPCKAKATRT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LHLGKMPYLSGAAYNVAVISSNQFGPGLNQTWHIPADTHTEPVALNISVGTNGTTMYWPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LHLGKMPYLSGAAYNVAVISSNQFGPGLNQTWHIPADTHTEPVALNISVGTNGTTMYWPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 RAQSMTYCIEWQPVGQDGGLATCSLTAPQDPDPAGMATYSWSRESGAMGQEKCYYITIFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RAQSMTYCIEWQPVGQDGGLATCSLTAPQDPDPAGMATYSWSRESGAMGQEKCYYITIFA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 SAHPEKLTLWSTVLSTYHFGGNASAAGTPHHVSVKNHSLDSVSVDWAPSLLSTCPGVLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SAHPEKLTLWSTVLSTYHFGGNASAAGTPHHVSVKNHSLDSVSVDWAPSLLSTCPGVLKE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 YVVRCRDEDSKQVSEHPVQPTETQVTLSGLRAGVAYTVQVRADTAWLRGVWSQPQRFSIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YVVRCRDEDSKQVSEHPVQPTETQVTLSGLRAGVAYTVQVRADTAWLRGVWSQPQRFSIE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 VQVSDWLIFFASLGSFLSILLVGVLGYLGLNRAARHLCPPLPTPCASSAIEFPGGKETWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VQVSDWLIFFASLGSFLSILLVGVLGYLGLNRAARHLCPPLPTPCASSAIEFPGGKETWQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 WINPVDFQEEASLQEALVVEMSWDKGERTEPLEKTELPEGAPELALDTELSLEDGDRCKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WINPVDFQEEASLQEALVVEMSWDKGERTEPLEKTELPEGAPELALDTELSLEDGDRCKA
              610       620       630       640       650       660

         
pF1KE2 KM
       ::
CCDS54 KM
         

>>CCDS32957.1 IL12RB1 gene_id:3594|Hs108|chr19            (381 aa)
 initn: 2417 init1: 2417 opt: 2417  Z-score: 2615.1  bits: 493.4 E(32554): 2.4e-139
Smith-Waterman score: 2417; 99.7% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KE2 MEPLVTWVVPLLFLFLLSRQGAACRTSECCFQDPPYPDADSGSASGPRDLRCYRISSDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEPLVTWVVPLLFLFLLSRQGAACRTSECCFQDPPYPDADSGSASGPRDLRCYRISSDRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ECSWQYEGPTAGVSHFLRCCLSSGRCCYFAAGSATRLQFSDQAGVSVLYTVTLWVESWAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ECSWQYEGPTAGVSHFLRCCLSSGRCCYFAAGSATRLQFSDQAGVSVLYTVTLWVESWAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 NQTEKSPEVTLQLYNSVKYEPPLGDIKVSKLAGQLRMEWETPDNQVGAEVQFRHRTPSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NQTEKSPEVTLQLYNSVKYEPPLGDIKVSKLAGQLRMEWETPDNQVGAEVQFRHRTPSSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 WKLGDCGPQDDDTESCLCPLEMNVAQEFQLRRRQLGSQGSSWSKWSSPVCVPPENPPQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WKLGDCGPQDDDTESCLCPLEMNVAQEFQLRRRQLGSQGSSWSKWSSPVCVPPENPPQPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 VRFSVEQLGQDGRRRLTLKEQPTQLELPEGCQGLAPGTEVTYRLQLHMLSCPCKAKATRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VRFSVEQLGQDGRRRLTLKEQPTQLELPEGCQGLAPGTEVTYRLQLHMLSCPCKAKATRT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LHLGKMPYLSGAAYNVAVISSNQFGPGLNQTWHIPADTHTEPVALNISVGTNGTTMYWPA
       ::::::::::::::::::::::::::::::::::::::::.                   
CCDS32 LHLGKMPYLSGAAYNVAVISSNQFGPGLNQTWHIPADTHTDGMISAHCNLRLPDSRDSPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 RAQSMTYCIEWQPVGQDGGLATCSLTAPQDPDPAGMATYSWSRESGAMGQEKCYYITIFA
                                                                   
CCDS32 SASRVAGITGICHHTRLILYF                                       
              370       380                                        




662 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:05:42 2016 done: Mon Nov  7 16:05:43 2016
 Total Scan time:  4.140 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]