FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2017, 594 aa
  1>>>pF1KE2017 594 - 594 aa - 594 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7272+/-0.0012; mu= 5.0065+/- 0.072
 mean_var=224.1783+/-44.503, 0's: 0 Z-trim(107.9): 24  B-trim: 23 in 1/53
 Lambda= 0.085660
 statistics sampled from 9852 (9863) to 9852 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.303), width:  16
 Scan time:  3.310

The best scores are:                                      opt bits E(32554)
CCDS13030.1 NOP56 gene_id:10528|Hs108|chr20        ( 594) 3742 475.9 6.2e-134
CCDS2353.1 NOP58 gene_id:51602|Hs108|chr2          ( 529) 1130 153.1 8.5e-37


>>CCDS13030.1 NOP56 gene_id:10528|Hs108|chr20             (594 aa)
 initn: 3742 init1: 3742 opt: 3742  Z-score: 2518.0  bits: 475.9 E(32554): 6.2e-134
Smith-Waterman score: 3742; 99.5% identity (99.8% similar) in 594 aa overlap (1-594:1-594)

               10        20        30        40        50        60
pF1KE2 MVLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASSQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASSQVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LENANAVSEGVVHEDLRLLLETHLPSKKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LENANAVSEGVVHEDLRLLLETHLPSKKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDK
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 DINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMDGAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMDGAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 AKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 AAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 MKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALASSENSSSTPEECEETSEKPK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS13 MKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALASSENSSSTPEECEEMSEKPK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 KKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDLEETAGSTSIPKRKKSTPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDLEETAGSTSIPKRKKSTPK
              490       500       510       520       530       540

              550       560       570       580       590    
pF1KE2 EETVNDPEEAGHRSGSKKKRKFSKEEPVSSGPEEAAGKSSSKKKKKFHKASQED
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS13 EETVNDPEEAGHRSGSKKKRKFSKEEPVSSGPEEAVGKSSSKKKKKFHKASQED
              550       560       570       580       590    

>>CCDS2353.1 NOP58 gene_id:51602|Hs108|chr2               (529 aa)
 initn: 1148 init1: 553 opt: 1130  Z-score: 774.1  bits: 153.1 E(32554): 8.5e-37
Smith-Waterman score: 1150; 40.2% identity (68.5% similar) in 533 aa overlap (6-515:3-524)

               10           20        30        40        50       
pF1KE2 MVLLHVLFEHAVGYALLAL---KEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASS
            :::: .::::.. .   :...:.. :  . :       : ..::.:  :  : ..
CCDS23    MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPE----KANKIVKLKHFEKFQDT
                  10        20        30            40        50   

        60        70        80        90       100       110       
pF1KE2 QVALENANAVSEGVVHEDLRLLLETHLPSKKKKVLLGVGDPKIGAAIQEELGYNCQTGGV
         ::   .:. :: ....:. .:.  .  :. .  :.:.: :.:..:.:.:. .:  . :
CCDS23 AEALAAFTALMEGKINKQLKKVLKKIV--KEAHEPLAVADAKLGGVIKEKLNLSCIHSPV
            60        70        80          90       100       110 

       120       130       140       150       160       170       
pF1KE2 IAEVLRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQ
       . :..::.: .. .:. :.         :::.:: :: ..::....::.::.:.:::::.
CCDS23 VNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDD
             120       130       140       150       160       170 

       180       190       200       210       220       230       
pF1KE2 LDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMD
       :::..:.. :: :::::.::::: :::.:: :::.  : .:.:..    :: .:    ..
CCDS23 LDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVE
             180       190       200       210       220       230 

       240       250       260       270       280       290       
pF1KE2 GAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLS
        :..::   :.. ::: ..:  :. ::  . ..:. .:::: .:. ::...:  .::...
CCDS23 -AEVKA---AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVT
                 240       250       260       270       280       

       300       310       320       330       340       350       
pF1KE2 ALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFI
       ...:: :::::::::::: ::::. ::::::::::::::::::.: .:::::::.:....
CCDS23 VMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLV
       290       300       310       320       330       340       

       360       370       380       390       400                 
pF1KE2 GRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE--------
       :... :.::.:::.:: :  .: : : :.:  .:..: . : ..: ::   :        
CCDS23 GQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKIS
       350       360       370       380       390       400       

      410       420       430              440       450        460
pF1KE2 -TGEIPRKNLDVMKEAMVQAEEAAAEIT-------RKLEKQEKKRLKKEKK-RLAALALA
        ::.   :.    ... :.. . ... :       ::.:. .:.    ::: . : . . 
CCDS23 GTGKALAKTEKYEHKSEVKTYDPSGDSTLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVK
       410       420       430       440       450       460       

              470       480       490          500       510       
pF1KE2 SSENSSSTPEECEETSEKPKKKKKQKPQEVPQEN-GMEDP--SISFSKPKKKKSFSKEEL
         :.      : :::: : ::::. : ... .:  . :.:  : ....:.:::. .:.  
CCDS23 VEEEEEEKVAEEEETSVK-KKKKRGKKKHIKEEPLSEEEPCTSTAIASPEKKKKKKKKRE
       470       480        490       500       510       520      

       520       530       540       550       560       570       
pF1KE2 MSSDLEETAGSTSIPKRKKSTPKEETVNDPEEAGHRSGSKKKRKFSKEEPVSSGPEEAAG
                                                                   
CCDS23 NED                                                         
                                                                   




594 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:08:48 2016 done: Sun Nov  6 13:08:49 2016
 Total Scan time:  3.310 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]