FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2004, 579 aa
  1>>>pF1KE2004 579 - 579 aa - 579 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6079+/-0.000824; mu= 12.6599+/- 0.050
 mean_var=85.6074+/-17.133, 0's: 0 Z-trim(109.2): 7  B-trim: 235 in 1/49
 Lambda= 0.138618
 statistics sampled from 10754 (10756) to 10754 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.33), width:  16
 Scan time:  3.780

The best scores are:                                      opt bits E(32554)
CCDS32579.1 FLCN gene_id:201163|Hs108|chr17        ( 579) 3926 795.0       0
CCDS32580.1 FLCN gene_id:201163|Hs108|chr17        ( 342) 2015 412.7 3.6e-115


>>CCDS32579.1 FLCN gene_id:201163|Hs108|chr17             (579 aa)
 initn: 3926 init1: 3926 opt: 3926  Z-score: 4242.7  bits: 795.0 E(32554):    0
Smith-Waterman score: 3926; 100.0% identity (100.0% similar) in 579 aa overlap (1-579:1-579)

               10        20        30        40        50        60
pF1KE2 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLADLEEESESWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLADLEEESESWD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NSEAEEEEKAPVLPESTEGRELTQGPAESSSLSGCGSWQPRKLPVFKSLRHMRQVLGAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NSEAEEEEKAPVLPESTEGRELTQGPAESSSLSGCGSWQPRKLPVFKSLRHMRQVLGAPS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 FRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTMLPVGCVRIIPYSSQYEEAYRCNFLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTMLPVGCVRIIPYSSQYEEAYRCNFLGL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 SPHVQIPPHVLSSEFAVIVEVHAAARSTLHPVGCEDDQSLSKYEFVVTSGSPVAADRVGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPHVQIPPHVLSSEFAVIVEVHAAARSTLHPVGCEDDQSLSKYEFVVTSGSPVAADRVGP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 TILNKIEAALTNQNLSVDVVDQCLVCLKEEWMNKVKVLFKFTKVDSRPKEDTQKLLSILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TILNKIEAALTNQNLSVDVVDQCLVCLKEEWMNKVKVLFKFTKVDSRPKEDTQKLLSILG
              490       500       510       520       530       540

              550       560       570         
pF1KE2 ASEEDNVKLLKFWMTGLSKTYKSHLMSTVRSPTASESRN
       :::::::::::::::::::::::::::::::::::::::
CCDS32 ASEEDNVKLLKFWMTGLSKTYKSHLMSTVRSPTASESRN
              550       560       570         

>>CCDS32580.1 FLCN gene_id:201163|Hs108|chr17             (342 aa)
 initn: 2015 init1: 2015 opt: 2015  Z-score: 2181.1  bits: 412.7 E(32554): 3.6e-115
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KE2 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLADLEEESESWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS32 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLAGEAGVLLPGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NSEAEEEEKAPVLPESTEGRELTQGPAESSSLSGCGSWQPRKLPVFKSLRHMRQVLGAPS
                                                                   
CCDS32 WPGWPWGGTSCLLSWQESLREGNAALNQPRTSLREAHPPISV                  
              310       320       330       340                    




579 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:16:21 2016 done: Sun Nov  6 12:16:21 2016
 Total Scan time:  3.780 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]