FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1994, 574 aa
  1>>>pF1KE1994 574 - 574 aa - 574 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4668+/-0.00105; mu= -4.4967+/- 0.063
 mean_var=295.8176+/-59.100, 0's: 0 Z-trim(113.2): 22  B-trim: 0 in 0/52
 Lambda= 0.074570
 statistics sampled from 13862 (13882) to 13862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.426), width:  16
 Scan time:  4.150

The best scores are:                                      opt bits E(32554)
CCDS247.1 IL22RA1 gene_id:58985|Hs108|chr1         ( 574) 3926 436.1 5.7e-122


>>CCDS247.1 IL22RA1 gene_id:58985|Hs108|chr1              (574 aa)
 initn: 3926 init1: 3926 opt: 3926  Z-score: 2303.2  bits: 436.1 E(32554): 5.7e-122
Smith-Waterman score: 3926; 100.0% identity (100.0% similar) in 574 aa overlap (1-574:1-574)

               10        20        30        40        50        60
pF1KE1 MRTLLTILTVGSLAAHAPEDPSDLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MRTLLTILTVGSLAAHAPEDPSDLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GERDWVAKKGCQRITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GERDWVAKKGCQRITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LKPPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LKPPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GKQREYEFFGLTPDTEFLGTIMICVPTWAKESAPYMCRVKTLPDRTWTYSFSGAFLFSMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GKQREYEFFGLTPDTEFLGTIMICVPTWAKESAPYMCRVKTLPDRTWTYSFSGAFLFSMG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 FLVAVLCYLSYRYVTKPPAPPNSLNVQRVLTFQPLRFIQEHVLIPVFDLSGPSSLAQPVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FLVAVLCYLSYRYVTKPPAPPNSLNVQRVLTFQPLRFIQEHVLIPVFDLSGPSSLAQPVQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 YSQIRVSGPREPAGAPQRHSLSEITYLGQPDISILQPSNVPPPQILSPLSYAPNAAPEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 YSQIRVSGPREPAGAPQRHSLSEITYLGQPDISILQPSNVPPPQILSPLSYAPNAAPEVG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 PPSYAPQVTPEAQFPFYAPQAISKVQPSSYAPQATPDSWPPSYGVCMEGSGKDSPTGTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PPSYAPQVTPEAQFPFYAPQAISKVQPSSYAPQATPDSWPPSYGVCMEGSGKDSPTGTLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 SPKHLRPKGQLQKEPPAGSCMLGGLSLQEVTSLAMEESQEAKSLHQPLGICTDRTSDPNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 SPKHLRPKGQLQKEPPAGSCMLGGLSLQEVTSLAMEESQEAKSLHQPLGICTDRTSDPNV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 LHSGEEGTPQYLKGQLPLLSSVQIEGHPMSLPLQPPSRPCSPSDQGPSPWGLLESLVCPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LHSGEEGTPQYLKGQLPLLSSVQIEGHPMSLPLQPPSRPCSPSDQGPSPWGLLESLVCPK
              490       500       510       520       530       540

              550       560       570    
pF1KE1 DEAKSPAPETSDLEQPTELDSLFRGLALTVQWES
       ::::::::::::::::::::::::::::::::::
CCDS24 DEAKSPAPETSDLEQPTELDSLFRGLALTVQWES
              550       560       570    




574 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:27:18 2016 done: Sun Nov  6 19:27:18 2016
 Total Scan time:  4.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]