Result of FASTA (omim) for
pFN21AE1984
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1984, 559 aa
1>>>pF1KE1984 559 - 559 aa - 559 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1518+/-0.000404; mu= -0.4636+/- 0.025
mean_var=158.1227+/-33.896, 0's: 0 Z-trim(116.2): 5 B-trim: 931 in 1/56
Lambda= 0.101995
statistics sampled from 27172 (27177) to 27172 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.319), width: 16
Scan time: 10.800
The best scores are: opt bits E(85289)
NP_079084 (OMIM: 610510) protein aurora borealis i ( 619) 3740 562.6 1.3e-159
NP_001273675 (OMIM: 610510) protein aurora boreali ( 634) 3740 562.6 1.3e-159
NP_001273676 (OMIM: 610510) protein aurora boreali ( 489) 3157 476.8 6.8e-134
XP_006719931 (OMIM: 610510) PREDICTED: protein aur ( 568) 3060 462.6 1.5e-129
>>NP_079084 (OMIM: 610510) protein aurora borealis isofo (619 aa)
initn: 3740 init1: 3740 opt: 3740 Z-score: 2986.7 bits: 562.6 E(85289): 1.3e-159
Smith-Waterman score: 3740; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:61-619)
10 20 30
pF1KE1 MGDVKESKMQITPETPGRIPVLNPFESPSD
::::::::::::::::::::::::::::::
NP_079 CLSWKLAWPPELPGVGTGGFVLYAPFSLCAMGDVKESKMQITPETPGRIPVLNPFESPSD
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE1 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE1 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE1 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
220 230 240 250 260 270
220 230 240 250 260 270
pF1KE1 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
280 290 300 310 320 330
280 290 300 310 320 330
pF1KE1 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
340 350 360 370 380 390
340 350 360 370 380 390
pF1KE1 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
400 410 420 430 440 450
400 410 420 430 440 450
pF1KE1 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
460 470 480 490 500 510
460 470 480 490 500 510
pF1KE1 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
520 530 540 550 560 570
520 530 540 550
pF1KE1 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
580 590 600 610
>>NP_001273675 (OMIM: 610510) protein aurora borealis is (634 aa)
initn: 3740 init1: 3740 opt: 3740 Z-score: 2986.6 bits: 562.6 E(85289): 1.3e-159
Smith-Waterman score: 3740; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:76-634)
10 20 30
pF1KE1 MGDVKESKMQITPETPGRIPVLNPFESPSD
::::::::::::::::::::::::::::::
NP_001 SHSIQGSRLHLNLPEVDSFPPHPAKFSLCAMGDVKESKMQITPETPGRIPVLNPFESPSD
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE1 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
230 240 250 260 270 280
220 230 240 250 260 270
pF1KE1 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
290 300 310 320 330 340
280 290 300 310 320 330
pF1KE1 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
350 360 370 380 390 400
340 350 360 370 380 390
pF1KE1 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
410 420 430 440 450 460
400 410 420 430 440 450
pF1KE1 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
470 480 490 500 510 520
460 470 480 490 500 510
pF1KE1 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
530 540 550 560 570 580
520 530 540 550
pF1KE1 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
590 600 610 620 630
>>NP_001273676 (OMIM: 610510) protein aurora borealis is (489 aa)
initn: 3155 init1: 3155 opt: 3157 Z-score: 2524.8 bits: 476.8 E(85289): 6.8e-134
Smith-Waterman score: 3157; 98.5% identity (99.6% similar) in 481 aa overlap (81-559:9-489)
60 70 80 90 100
pF1KE1 PTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHS--RIDKDVEDKRQKAIEEFFTKDV
:.:... .:::::::::::::::::::::
NP_001 MNKLSPVLLFLNQQNYQIDKDVEDKRQKAIEEFFTKDV
10 20 30
110 120 130 140 150 160
pF1KE1 IVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKSDAACQTLLSLPVDFNLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKSDAACQTLLSLPVDFNLEN
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 ILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPSASPGSPHSGVQTSLEMFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPSASPGSPHSGVQTSLEMFY
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 SIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPIEFQIGETP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPIEFQIGETP
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 LSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSV
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE1 IQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQ
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE1 NQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAF
340 350 360 370 380 390
470 480 490 500 510 520
pF1KE1 SIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEV
400 410 420 430 440 450
530 540 550
pF1KE1 ESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
:::::::::::::::::::::::::::::::
NP_001 ESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
460 470 480
>>XP_006719931 (OMIM: 610510) PREDICTED: protein aurora (568 aa)
initn: 3384 init1: 3060 opt: 3060 Z-score: 2446.6 bits: 462.6 E(85289): 1.5e-129
Smith-Waterman score: 3286; 90.9% identity (90.9% similar) in 559 aa overlap (1-559:61-568)
10 20 30
pF1KE1 MGDVKESKMQITPETPGRIPVLNPFESPSD
::::::::::::::::::::::::::::::
XP_006 CLSWKLAWPPELPGVGTGGFVLYAPFSLCAMGDVKESKMQITPETPGRIPVLNPFESPSD
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE1 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
:::::::::::::::::::::
XP_006 YSNLHEQTLASPSVFKSTKLP---------------------------------------
100 110
100 110 120 130 140 150
pF1KE1 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ------------FFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
120 130 140 150
160 170 180 190 200 210
pF1KE1 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
160 170 180 190 200 210
220 230 240 250 260 270
pF1KE1 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
220 230 240 250 260 270
280 290 300 310 320 330
pF1KE1 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
280 290 300 310 320 330
340 350 360 370 380 390
pF1KE1 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
340 350 360 370 380 390
400 410 420 430 440 450
pF1KE1 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
400 410 420 430 440 450
460 470 480 490 500 510
pF1KE1 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
460 470 480 490 500 510
520 530 540 550
pF1KE1 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
520 530 540 550 560
559 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:35:03 2016 done: Sun Nov 6 14:35:05 2016
Total Scan time: 10.800 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]