Result of FASTA (ccds) for
pFN21AE1984
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1984, 559 aa
1>>>pF1KE1984 559 - 559 aa - 559 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2498+/-0.000958; mu= 4.4384+/- 0.057
mean_var=127.2605+/-26.066, 0's: 0 Z-trim(108.5): 19 B-trim: 221 in 1/52
Lambda= 0.113691
statistics sampled from 10232 (10236) to 10232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.314), width: 16
Scan time: 3.530
The best scores are: opt bits E(32554)
CCDS9446.2 BORA gene_id:79866|Hs108|chr13 ( 619) 3740 624.9 8.6e-179
CCDS73583.1 BORA gene_id:79866|Hs108|chr13 ( 634) 3740 624.9 8.8e-179
CCDS66560.1 BORA gene_id:79866|Hs108|chr13 ( 489) 3157 529.3 4.2e-150
>>CCDS9446.2 BORA gene_id:79866|Hs108|chr13 (619 aa)
initn: 3740 init1: 3740 opt: 3740 Z-score: 3323.4 bits: 624.9 E(32554): 8.6e-179
Smith-Waterman score: 3740; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:61-619)
10 20 30
pF1KE1 MGDVKESKMQITPETPGRIPVLNPFESPSD
::::::::::::::::::::::::::::::
CCDS94 CLSWKLAWPPELPGVGTGGFVLYAPFSLCAMGDVKESKMQITPETPGRIPVLNPFESPSD
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE1 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE1 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE1 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
220 230 240 250 260 270
220 230 240 250 260 270
pF1KE1 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
280 290 300 310 320 330
280 290 300 310 320 330
pF1KE1 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
340 350 360 370 380 390
340 350 360 370 380 390
pF1KE1 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
400 410 420 430 440 450
400 410 420 430 440 450
pF1KE1 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
460 470 480 490 500 510
460 470 480 490 500 510
pF1KE1 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
520 530 540 550 560 570
520 530 540 550
pF1KE1 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
580 590 600 610
>>CCDS73583.1 BORA gene_id:79866|Hs108|chr13 (634 aa)
initn: 3740 init1: 3740 opt: 3740 Z-score: 3323.2 bits: 624.9 E(32554): 8.8e-179
Smith-Waterman score: 3740; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:76-634)
10 20 30
pF1KE1 MGDVKESKMQITPETPGRIPVLNPFESPSD
::::::::::::::::::::::::::::::
CCDS73 SHSIQGSRLHLNLPEVDSFPPHPAKFSLCAMGDVKESKMQITPETPGRIPVLNPFESPSD
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE1 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
230 240 250 260 270 280
220 230 240 250 260 270
pF1KE1 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS
290 300 310 320 330 340
280 290 300 310 320 330
pF1KE1 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW
350 360 370 380 390 400
340 350 360 370 380 390
pF1KE1 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN
410 420 430 440 450 460
400 410 420 430 440 450
pF1KE1 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE
470 480 490 500 510 520
460 470 480 490 500 510
pF1KE1 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD
530 540 550 560 570 580
520 530 540 550
pF1KE1 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
590 600 610 620 630
>>CCDS66560.1 BORA gene_id:79866|Hs108|chr13 (489 aa)
initn: 3155 init1: 3155 opt: 3157 Z-score: 2808.3 bits: 529.3 E(32554): 4.2e-150
Smith-Waterman score: 3157; 98.5% identity (99.6% similar) in 481 aa overlap (81-559:9-489)
60 70 80 90 100
pF1KE1 PTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHS--RIDKDVEDKRQKAIEEFFTKDV
:.:... .:::::::::::::::::::::
CCDS66 MNKLSPVLLFLNQQNYQIDKDVEDKRQKAIEEFFTKDV
10 20 30
110 120 130 140 150 160
pF1KE1 IVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKSDAACQTLLSLPVDFNLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKSDAACQTLLSLPVDFNLEN
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 ILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPSASPGSPHSGVQTSLEMFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPSASPGSPHSGVQTSLEMFY
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 SIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPIEFQIGETP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPIEFQIGETP
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 LSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSV
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE1 IQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQ
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE1 NQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAF
340 350 360 370 380 390
470 480 490 500 510 520
pF1KE1 SIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEV
400 410 420 430 440 450
530 540 550
pF1KE1 ESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
:::::::::::::::::::::::::::::::
CCDS66 ESKSQAFNMKQDHTTQRCWMKTASPFQCSSP
460 470 480
559 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:35:03 2016 done: Sun Nov 6 14:35:03 2016
Total Scan time: 3.530 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]