FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1982, 558 aa
  1>>>pF1KE1982 558 - 558 aa - 558 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6568+/-0.00094; mu= 16.6354+/- 0.057
 mean_var=65.6640+/-13.207, 0's: 0 Z-trim(105.1): 19  B-trim: 0 in 0/50
 Lambda= 0.158274
 statistics sampled from 8257 (8265) to 8257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.254), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS7382.1 GLUD1 gene_id:2746|Hs108|chr10          ( 558) 3708 855.8       0
CCDS14603.1 GLUD2 gene_id:2747|Hs108|chrX          ( 558) 3548 819.2       0


>>CCDS7382.1 GLUD1 gene_id:2746|Hs108|chr10               (558 aa)
 initn: 3708 init1: 3708 opt: 3708  Z-score: 4571.9  bits: 855.8 E(32554):    0
Smith-Waterman score: 3708; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)

               10        20        30        40        50        60
pF1KE1 MYRYLGEALLLSRAGPAALGSASADSAALLGWARGQPAAAPQPGLALAARRHYSEAVADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MYRYLGEALLLSRAGPAALGSASADSAALLGWARGQPAAAPQPGLALAARRHYSEAVADR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EDDPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EDDPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 NIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 HGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYV
              490       500       510       520       530       540

              550        
pF1KE1 NAIEKVFKVYNEAGVTFT
       ::::::::::::::::::
CCDS73 NAIEKVFKVYNEAGVTFT
              550        

>>CCDS14603.1 GLUD2 gene_id:2747|Hs108|chrX               (558 aa)
 initn: 3548 init1: 3548 opt: 3548  Z-score: 4374.5  bits: 819.2 E(32554):    0
Smith-Waterman score: 3548; 95.7% identity (98.6% similar) in 558 aa overlap (1-558:1-558)

               10        20        30        40        50        60
pF1KE1 MYRYLGEALLLSRAGPAALGSASADSAALLGWARGQPAAAPQPGLALAARRHYSEAVADR
       :::::..::: :::::::::::.  :::::: .::::::: :::::::::::::: ::::
CCDS14 MYRYLAKALLPSRAGPAALGSAANHSAALLGRGRGQPAAASQPGLALAARRHYSELVADR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EDDPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSF
       ::::::::::::::::::::::::::.::::.::::::::::::::::::::::::::::
CCDS14 EDDPNFFKMVEGFFDRGASIVEDKLVKDLRTQESEEQKRNRVRGILRIIKPCNHVLSLSF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY
       ::::::::::::::.:::::::::::::::::::::::.:::::::.:::::::::::::
CCDS14 GAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS14 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER
       :::::::::::::.:::::::::.::::::::::::::::::::::::::::::::::::
CCDS14 FPKAKPYEGSILEVDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 NIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGK
       ::.::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS14 NILVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLLSVQESLERKFGK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 HGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYV
       ::::::::::::::: ::::::::::::.:::::::::::::.:::::::::::::::::
CCDS14 HGGTIPIVPTAEFQDSISGASEKDIVHSALAYTMERSARQIMHTAMKYNLGLDLRTAAYV
              490       500       510       520       530       540

              550        
pF1KE1 NAIEKVFKVYNEAGVTFT
       ::::::::::.:::::::
CCDS14 NAIEKVFKVYSEAGVTFT
              550        




558 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:24:33 2016 done: Sun Nov  6 15:24:34 2016
 Total Scan time:  2.520 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]