Result of FASTA (omim) for
pFN21AE1966
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1966, 524 aa
1>>>pF1KE1966 524 - 524 aa - 524 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3223+/-0.000709; mu= 2.2797+/- 0.045
mean_var=505.1159+/-107.586, 0's: 0 Z-trim(115.8): 234 B-trim: 2860 in 2/53
Lambda= 0.057066
statistics sampled from 26293 (26552) to 26293 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.311), width: 16
Scan time: 9.440
The best scores are: opt bits E(85289)
NP_004893 (OMIM: 604739) RNA-binding protein 39 is ( 524) 3400 295.5 2.6e-79
NP_909122 (OMIM: 604739) RNA-binding protein 39 is ( 530) 3378 293.7 9.1e-79
NP_001310353 (OMIM: 604739) RNA-binding protein 39 ( 529) 3361 292.3 2.4e-78
NP_001229529 (OMIM: 604739) RNA-binding protein 39 ( 502) 2800 246.1 1.9e-64
NP_001229528 (OMIM: 604739) RNA-binding protein 39 ( 508) 2778 244.3 6.6e-64
XP_016883631 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54
XP_016883634 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54
XP_016883632 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54
XP_016883630 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54
XP_016883633 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 2371 210.6 6.8e-54
NP_001310351 (OMIM: 604739) RNA-binding protein 39 ( 498) 2359 209.8 1.6e-53
XP_016883629 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53
XP_011527413 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53
NP_001310352 (OMIM: 604739) RNA-binding protein 39 ( 373) 2349 208.8 2.4e-53
XP_006723954 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53
XP_016883628 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53
XP_006723953 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 2349 208.8 2.4e-53
XP_016883627 (OMIM: 604739) PREDICTED: RNA-binding ( 476) 1759 160.3 1.1e-38
XP_016883636 (OMIM: 604739) PREDICTED: RNA-binding ( 341) 1330 124.8 4.1e-28
XP_016883635 (OMIM: 604739) PREDICTED: RNA-binding ( 341) 1330 124.8 4.1e-28
NP_001161086 (OMIM: 155950,166700,607844) inner nu ( 910) 331 43.2 0.004
NP_055134 (OMIM: 155950,166700,607844) inner nucle ( 911) 331 43.2 0.004
>>NP_004893 (OMIM: 604739) RNA-binding protein 39 isofor (524 aa)
initn: 3400 init1: 3400 opt: 3400 Z-score: 1544.9 bits: 295.5 E(85289): 2.6e-79
Smith-Waterman score: 3400; 100.0% identity (100.0% similar) in 524 aa overlap (1-524:1-524)
10 20 30 40 50 60
pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA
430 440 450 460 470 480
490 500 510 520
pF1KE1 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
::::::::::::::::::::::::::::::::::::::::::::
NP_004 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
490 500 510 520
>>NP_909122 (OMIM: 604739) RNA-binding protein 39 isofor (530 aa)
initn: 2726 init1: 2538 opt: 3378 Z-score: 1535.1 bits: 293.7 E(85289): 9.1e-79
Smith-Waterman score: 3378; 98.9% identity (98.9% similar) in 530 aa overlap (1-524:1-530)
10 20 30 40 50 60
pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_909 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_909 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_909 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_909 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_909 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_909 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
310 320 330 340 350 360
370 380 390 400 410
pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVA------DLQTRLSQQTEASALAAAASVQP
::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_909 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE1 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_909 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
430 440 450 460 470 480
480 490 500 510 520
pF1KE1 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_909 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
490 500 510 520 530
>>NP_001310353 (OMIM: 604739) RNA-binding protein 39 iso (529 aa)
initn: 2532 init1: 1756 opt: 3361 Z-score: 1527.5 bits: 292.3 E(85289): 2.4e-78
Smith-Waterman score: 3361; 98.7% identity (98.7% similar) in 530 aa overlap (1-524:1-529)
10 20 30 40 50 60
pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -RRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
130 140 150 160 170
190 200 210 220 230 240
pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
300 310 320 330 340 350
370 380 390 400 410
pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVA------DLQTRLSQQTEASALAAAASVQP
::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_001 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE1 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
420 430 440 450 460 470
480 490 500 510 520
pF1KE1 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
480 490 500 510 520
>>NP_001229529 (OMIM: 604739) RNA-binding protein 39 iso (502 aa)
initn: 3242 init1: 2618 opt: 2800 Z-score: 1278.1 bits: 246.1 E(85289): 1.9e-64
Smith-Waterman score: 3202; 95.8% identity (95.8% similar) in 524 aa overlap (1-524:1-502)
10 20 30 40 50 60
pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
:::::::::::::::::::::::::::::::::::::::
NP_001 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPY---------------------
70 80 90
130 140 150 160 170 180
pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -RRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE1 QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA
400 410 420 430 440 450
490 500 510 520
pF1KE1 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
460 470 480 490 500
>>NP_001229528 (OMIM: 604739) RNA-binding protein 39 iso (508 aa)
initn: 2380 init1: 1756 opt: 2778 Z-score: 1268.3 bits: 244.3 E(85289): 6.6e-64
Smith-Waterman score: 3180; 94.7% identity (94.7% similar) in 530 aa overlap (1-524:1-508)
10 20 30 40 50 60
pF1KE1 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
:::::::::::::::::::::::::::::::::::::::
NP_001 RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPY---------------------
70 80 90
130 140 150 160 170 180
pF1KE1 SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -RRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE1 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE1 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
280 290 300 310 320 330
370 380 390 400 410
pF1KE1 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVA------DLQTRLSQQTEASALAAAASVQP
::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_001 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP
340 350 360 370 380 390
420 430 440 450 460 470
pF1KE1 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
400 410 420 430 440 450
480 490 500 510 520
pF1KE1 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
460 470 480 490 500
>>XP_016883631 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa)
initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54
Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367)
130 140 150 160 170 180
pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD
::::::::::::::::::::::::::::::
XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD
10 20 30
190 200 210 220 230 240
pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
280 290 300 310 320 330
490 500 510 520
pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
:::::::::::::::::::::::::::::::::::::
XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
340 350 360
>>XP_016883634 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa)
initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54
Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367)
130 140 150 160 170 180
pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD
::::::::::::::::::::::::::::::
XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD
10 20 30
190 200 210 220 230 240
pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
280 290 300 310 320 330
490 500 510 520
pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
:::::::::::::::::::::::::::::::::::::
XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
340 350 360
>>XP_016883632 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa)
initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54
Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367)
130 140 150 160 170 180
pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD
::::::::::::::::::::::::::::::
XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD
10 20 30
190 200 210 220 230 240
pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
280 290 300 310 320 330
490 500 510 520
pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
:::::::::::::::::::::::::::::::::::::
XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
340 350 360
>>XP_016883630 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa)
initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54
Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367)
130 140 150 160 170 180
pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD
::::::::::::::::::::::::::::::
XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD
10 20 30
190 200 210 220 230 240
pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
280 290 300 310 320 330
490 500 510 520
pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
:::::::::::::::::::::::::::::::::::::
XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
340 350 360
>>XP_016883633 (OMIM: 604739) PREDICTED: RNA-binding pro (367 aa)
initn: 2371 init1: 2371 opt: 2371 Z-score: 1088.5 bits: 210.6 E(85289): 6.8e-54
Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 367 aa overlap (158-524:1-367)
130 140 150 160 170 180
pF1KE1 KSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD
::::::::::::::::::::::::::::::
XP_016 MQLAARIRPRDLEEFFSTVGKVRDVRMISD
10 20 30
190 200 210 220 230 240
pF1KE1 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE1 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE1 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGT
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE1 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFN
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE1 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG
280 290 300 310 320 330
490 500 510 520
pF1KE1 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
:::::::::::::::::::::::::::::::::::::
XP_016 RWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
340 350 360
524 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:04:35 2016 done: Sun Nov 6 13:04:37 2016
Total Scan time: 9.440 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]