FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1956, 513 aa
  1>>>pF1KE1956 513 - 513 aa - 513 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1512+/-0.00101; mu= 15.9009+/- 0.060
 mean_var=129.1260+/-26.378, 0's: 0 Z-trim(108.8): 19  B-trim: 40 in 2/48
 Lambda= 0.112867
 statistics sampled from 10460 (10467) to 10460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.322), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS43218.1 ZCCHC4 gene_id:29063|Hs108|chr4        ( 513) 3621 601.3 8.7e-172


>>CCDS43218.1 ZCCHC4 gene_id:29063|Hs108|chr4             (513 aa)
 initn: 3621 init1: 3621 opt: 3621  Z-score: 3197.6  bits: 601.3 E(32554): 8.7e-172
Smith-Waterman score: 3621; 99.6% identity (99.8% similar) in 513 aa overlap (1-513:1-513)

               10        20        30        40        50        60
pF1KE1 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGKTGRKQSPVRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGKTGRKQSPVRI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCEHCNSCTSKDGRKWNHCFLCKKCVKP
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS43 FTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCELCNSCTSKDGRKWNHCFLCKKCVKP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 SWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVRKQKQRKSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVRKQKQRKSN
              430       440       450       460       470       480

              490       500       510   
pF1KE1 KMKMETTKGQSMNHTSATRRKKRRERAHQYLGS
       :::::::::::::::::::::::::::::::::
CCDS43 KMKMETTKGQSMNHTSATRRKKRRERAHQYLGS
              490       500       510   




513 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:43:05 2016 done: Sun Nov  6 05:43:05 2016
 Total Scan time:  2.680 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]