FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1948, 503 aa
  1>>>pF1KE1948 503 - 503 aa - 503 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7588+/-0.0011; mu= 10.7875+/- 0.066
 mean_var=106.3722+/-21.585, 0's: 0 Z-trim(105.4): 23  B-trim: 77 in 1/48
 Lambda= 0.124354
 statistics sampled from 8373 (8379) to 8373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.257), width:  16
 Scan time:  3.320

The best scores are:                                      opt bits E(32554)
CCDS1805.2 THUMPD2 gene_id:80745|Hs108|chr2        ( 503) 3287 601.0  1e-171
CCDS2573.1 THUMPD3 gene_id:25917|Hs108|chr3        ( 507)  425 87.5 3.8e-17


>>CCDS1805.2 THUMPD2 gene_id:80745|Hs108|chr2             (503 aa)
 initn: 3287 init1: 3287 opt: 3287  Z-score: 3196.4  bits: 601.0 E(32554): 1e-171
Smith-Waterman score: 3287; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)

               10        20        30        40        50        60
pF1KE1 MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARLAATQVEYISGKVFFTTCSDLNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARLAATQVEYISGKVFFTTCSDLNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LKKLKSAERLFLLIKKQFPLIISSVSKGKIFNEMQRLINEDPGSWLNAISIWKNLLELDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LKKLKSAERLFLLIKKQFPLIISSVSKGKIFNEMQRLINEDPGSWLNAISIWKNLLELDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 KKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SEKFQEEEFQNDIEKAIDTHNQNDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SEKFQEEEFQNDIEKAIDTHNQNDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KADLRNPQLEIFIHLNDIYSVVGIPVFRVSLASRAYIKTAGLRSTIAWAMASLADIKAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 KADLRNPQLEIFIHLNDIYSVVGIPVFRVSLASRAYIKTAGLRSTIAWAMASLADIKAGA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 FVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNLKAAGLEDKIELLKISVIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 FVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNLKAAGLEDKIELLKISVIE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDCK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 ESNIPFNSKDSHTDEPGIKKCLNPEEKTGAFKTASTSFEASNHKFLDRMSPFGSLVPVEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ESNIPFNSKDSHTDEPGIKKCLNPEEKTGAFKTASTSFEASNHKFLDRMSPFGSLVPVEC
              430       440       450       460       470       480

              490       500   
pF1KE1 YKVSLGKTDAFICKYKKSHSSGL
       :::::::::::::::::::::::
CCDS18 YKVSLGKTDAFICKYKKSHSSGL
              490       500   

>>CCDS2573.1 THUMPD3 gene_id:25917|Hs108|chr3             (507 aa)
 initn: 350 init1: 155 opt: 425  Z-score: 421.4  bits: 87.5 E(32554): 3.8e-17
Smith-Waterman score: 492; 27.5% identity (60.8% similar) in 426 aa overlap (9-411:31-447)

                                     10        20        30        
pF1KE1                       MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARL
                                     ::  :  . .  :.  :.:  .  ::: .:
CCDS25 MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL
               10        20        30        40        50        60

       40         50         60        70        80        90      
pF1KE1 AAT-QVEYISGKVFFT-TCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKIFNEMQR
       ... ..    ::..:. .  .: ... :.:.. ::.... .:     . .: ....... 
CCDS25 GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQ-EFQDYQFKQTKEEVLKDFED
               70        80        90        100       110         

        100       110       120       130       140       150      
pF1KE1 LINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIE
       : .. :  : : ...::    .  :: : .. ..:. :.:.....    ..::.: .  .
CCDS25 LAGKLP--WSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQ----EVKIDQRNVKK
     120         130       140       150       160           170   

        160          170       180        190       200       210  
pF1KE1 ENRDCQLEKQI---KEETLEQRDFTTK-SEKFQEEEFQNDIEKAIDTHNQNDLTFRVSCR
       :  .  :...:    :.   ..: .:  .. .   . ..:  .  .:. :  : :::.: 
CCDS25 EFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQV-LKFRVTCN
           180       190       200       210       220        230  

            220       230       240       250       260       270  
pF1KE1 CSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPVFRVSLA
        .:   . ::..:... .: :.. .: ::::. : ..:......:   .::: . . :: 
CCDS25 RAGE-KHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLH
             240       250       260       270       280       290 

              280       290       300       310       320       330
pF1KE1 SR--AYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADV
        :  ...  . ::::.:..:  : :     ...::::: :.: .:.: :: : .....: 
CCDS25 RRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDN
             300       310       320       330       340       350 

              340            350             360       370         
pF1KE1 SDSQLLGTWDNL-----KAAGLEDK------IELLKISVIELPLPSESVDIIISDIPFGK
       .   .  . .:.     :.   : :      :. .. .. .::: . :::::..:.::::
CCDS25 NPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGK
             360       370       380       390       400       410 

     380       390           400       410       420       430     
pF1KE1 KFKLGKDIKSI----LQEMERVLHVGGTIVLLLSEDHHRRLTDCKESNIPFNSKDSHTDE
       ..   :   ..    :.:: ::       ..::..:                        
CCDS25 RMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVN
             420       430       440       450       460       470 

         440       450       460       470       480       490     
pF1KE1 PGIKKCLNPEEKTGAFKTASTSFEASNHKFLDRMSPFGSLVPVECYKVSLGKTDAFICKY
                                                                   
CCDS25 VGGLRAAVYVLIRTPQAFVHPSEQDGERGTLWQCKE                        
             480       490       500                               




503 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:30:50 2016 done: Sun Nov  6 18:30:51 2016
 Total Scan time:  3.320 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]