FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1944, 500 aa
  1>>>pF1KE1944 500 - 500 aa - 500 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4689+/-0.00102; mu= -2.5767+/- 0.061
 mean_var=360.0171+/-72.437, 0's: 0 Z-trim(115.7): 32  B-trim: 125 in 1/52
 Lambda= 0.067595
 statistics sampled from 16256 (16277) to 16256 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.5), width:  16
 Scan time:  4.150

The best scores are:                                      opt bits E(32554)
CCDS34463.1 NFKBIE gene_id:4794|Hs108|chr6         ( 500) 3408 346.0 5.6e-95
CCDS12642.2 BCL3 gene_id:602|Hs108|chr19           ( 454)  592 71.4 2.4e-12


>>CCDS34463.1 NFKBIE gene_id:4794|Hs108|chr6              (500 aa)
 initn: 3408 init1: 3408 opt: 3408  Z-score: 1818.6  bits: 346.0 E(32554): 5.6e-95
Smith-Waterman score: 3408; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)

               10        20        30        40        50        60
pF1KE1 MNQRRSESRPGNHRLQAYAEPGKGDSGGAGPLSGSARRGRGGGGAIRVRRPCWSGGAGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MNQRRSESRPGNHRLQAYAEPGKGDSGGAGPLSGSARRGRGGGGAIRVRRPCWSGGAGRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GGPAWAVRLPTVTAGWTWPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGPAWAVRLPTVTAGWTWPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RSLEPDPAQTGPRPARAAGMSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAPASGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSLEPDPAQTGPRPARAAGMSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAPASGPS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DGSPQPCTHPPGPVKEPQEKEDADGERADSTYGSSSLTYTLSLLGGPEAEDPAPRLPLPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DGSPQPCTHPPGPVKEPQEKEDADGERADSTYGSSSLTYTLSLLGGPEAEDPAPRLPLPH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCLALLPQEVLDIQNNLYQTALHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCLALLPQEVLDIQNNLYQTALHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGRGTSHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGRGTSHS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQERGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQERGLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 QFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVEDETPQDLTEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVEDETPQDLTEES
              430       440       450       460       470       480

              490       500
pF1KE1 LVLLPFDDLKISGKLLLCTD
       ::::::::::::::::::::
CCDS34 LVLLPFDDLKISGKLLLCTD
              490       500

>>CCDS12642.2 BCL3 gene_id:602|Hs108|chr19                (454 aa)
 initn: 513 init1: 324 opt: 592  Z-score: 335.0  bits: 71.4 E(32554): 2.4e-12
Smith-Waterman score: 592; 39.0% identity (59.1% similar) in 328 aa overlap (163-473:35-345)

            140       150       160       170            180       
pF1KE1 RPARAAGMSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAP--ASG---PSDGSPQPC
                                     : ::.     .::  :.:   : :     :
CCDS12 PAGAMDEGPVDLRTRPKAAGLPGAALPLRKRPLRAPSPEPAAPRGAAGLVVPLDPLRGGC
           10        20        30        40        50        60    

       190         200       210         220       230       240   
pF1KE1 THP--PGPVKEPQEKEDADGERADSTYGSSSLT--YTLSLLGGPEAEDPAPRLPLPHVGA
         :  :::   :.        : .. :  ..:   :    .:.:    :   :: :    
CCDS12 DLPAVPGP---PH-----GLARPEALYYPGALLPLYPTRAMGSPF---PLVNLPTPLYPM
           70                80        90       100          110   

                 250       260        270        280       290     
pF1KE1 LSPQQ------LEALTYISEDGDTLVHLAVIH-EAPAVL-LCCLALLPQEVLDIQNNLYQ
       . :..      .   :  .::::: .:.::.. . :::  :  :     . ::: ::: :
CCDS12 MCPMEHPLSADIAMATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ
           120       130       140       150       160       170   

         300       310       320       330       340       350     
pF1KE1 TALHLAVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGR
       : :::::    :..:: ::  :::    ::::.:: :.::...  .: : ::..   :: 
CCDS12 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS-AAPG-
           180       190       200       210       220        230  

         360       370       380       390       400       410     
pF1KE1 GTSHSLDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQ
           .:::. .:..::. ::.:.  . :  ..:::. :::::. .  ::.. :  :::..
CCDS12 ----TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN
                 240       250       260       270       280       

         420       430       440       450       460       470     
pF1KE1 ERGLVQFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVEDETPQD
         ..::.::: ::.:.:.: .: . :: :.::::. .  :: ..:::: :.: ...::  
CCDS12 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM
       290       300       310       320       330       340       

         480       490       500                                   
pF1KE1 LTEESLVLLPFDDLKISGKLLLCTD                                   
                                                                   
CCDS12 VARSRRVIDILRGKATRPASTSQPDPSPDRSANTSPESSSRLSSNGLLSASPSSSPSQSP
       350       360       370       380       390       400       




500 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:19:02 2016 done: Sun Nov  6 11:19:02 2016
 Total Scan time:  4.150 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]