Result of FASTA (ccds) for
pFN21AE1940
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1940, 486 aa
1>>>pF1KE1940 486 - 486 aa - 486 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9297+/-0.000796; mu= 15.8269+/- 0.048
mean_var=84.3440+/-16.446, 0's: 0 Z-trim(108.9): 8 B-trim: 0 in 0/53
Lambda= 0.139652
statistics sampled from 10546 (10550) to 10546 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.324), width: 16
Scan time: 3.470
The best scores are: opt bits E(32554)
CCDS10857.1 DPEP2 gene_id:64174|Hs108|chr16 ( 486) 3223 659.1 3e-189
CCDS10856.1 DPEP3 gene_id:64180|Hs108|chr16 ( 513) 2179 448.8 6.6e-126
CCDS10982.1 DPEP1 gene_id:1800|Hs108|chr16 ( 411) 1225 256.5 4e-68
>>CCDS10857.1 DPEP2 gene_id:64174|Hs108|chr16 (486 aa)
initn: 3223 init1: 3223 opt: 3223 Z-score: 3511.0 bits: 659.1 E(32554): 3e-189
Smith-Waterman score: 3223; 100.0% identity (100.0% similar) in 486 aa overlap (1-486:1-486)
10 20 30 40 50 60
pF1KE1 MQPSGLEGPGTFGRWPLLSLLLLLLLLQPVTCAYTTPGPPRALTTLGAPRAHTMPGTYAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MQPSGLEGPGTFGRWPLLSLLLLLLLLQPVTCAYTTPGPPRALTTLGAPRAHTMPGTYAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 STTLSSPSTQGLQEQARALMRDFPLVDGHNDLPLVLRQVYQKGLQDVNLRNFSYGQTSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STTLSSPSTQGLQEQARALMRDFPLVDGHNDLPLVLRQVYQKGLQDVNLRNFSYGQTSLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RLRDGLVGAQFWSAYVPCQTQDRDALRLTLEQIDLIRRMCASYSELELVTSAKALNDTQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RLRDGLVGAQFWSAYVPCQTQDRDALRLTLEQIDLIRRMCASYSELELVTSAKALNDTQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LACLIGVEGGHSLDNSLSILRTFYMLGVRYLTLTHTCNTPWAESSAKGVHSFYNNISGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LACLIGVEGGHSLDNSLSILRTFYMLGVRYLTLTHTCNTPWAESSAKGVHSFYNNISGLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DFGEKVVAEMNRLGMMVDLSHVSDAVARRALEVSQAPVIFSHSAARGVCNSARNVPDDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DFGEKVVAEMNRLGMMVDLSHVSDAVARRALEVSQAPVIFSHSAARGVCNSARNVPDDIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QLLKKNGGVVMVSLSMGVIQCNPSANVSTVADHFDHIKAVIGSKFIGIGGDYDGAGKFPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QLLKKNGGVVMVSLSMGVIQCNPSANVSTVADHFDHIKAVIGSKFIGIGGDYDGAGKFPQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 GLEDVSTYPVLIEELLSRGWSEEELQGVLRGNLLRVFRQVEKVQEENKWQSPLEDKFPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GLEDVSTYPVLIEELLSRGWSEEELQGVLRGNLLRVFRQVEKVQEENKWQSPLEDKFPDE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 QLSSSCHSDLSRLRQRQSLTSGQELTEIPIHWTAKLPAKWSVSESSPHMAPVLAVVATFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QLSSSCHSDLSRLRQRQSLTSGQELTEIPIHWTAKLPAKWSVSESSPHMAPVLAVVATFP
430 440 450 460 470 480
pF1KE1 VLILWL
::::::
CCDS10 VLILWL
>>CCDS10856.1 DPEP3 gene_id:64180|Hs108|chr16 (513 aa)
initn: 2157 init1: 1926 opt: 2179 Z-score: 2373.9 bits: 448.8 E(32554): 6.6e-126
Smith-Waterman score: 2179; 69.6% identity (86.0% similar) in 494 aa overlap (1-486:26-512)
10 20 30
pF1KE1 MQPSGLEGPGTFGRWPLLSLLLLLLLL---QPVTC
:::.: :: ...: : :::::::: ::::
CCDS10 MIRTPLSASAHRLLLPGSRGRPPRNMQPTGREGSRALSRRYLRRLLLLLLLLLLRQPVTR
10 20 30 40 50 60
40 50 60 70 80
pF1KE1 AYTTPGPPRALTTLGAPRAHTMPGTYA----PS-TTLSSPSTQGLQEQARALMRDFPLVD
: :::: ::::.:::.: : ::. . :. :: ..:.: :. .:.::::.:::::
CCDS10 AETTPGAPRALSTLGSPSLFTTPGVPSALTTPGLTTPGTPKTLDLRGRAQALMRSFPLVD
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE1 GHNDLPLVLRQVYQKGLQDVNLRNFSYGQTSLDRLRDGLVGAQFWSAYVPCQTQDRDALR
:::::: :::: :.. ::::::::::.:::::::::::::::::::: : ::.::. :.:
CCDS10 GHNDLPQVLRQRYKNVLQDVNLRNFSHGQTSLDRLRDGLVGAQFWSASVSCQSQDQTAVR
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE1 LTLEQIDLIRRMCASYSELELVTSAKALNDTQKLACLIGVEGGHSLDNSLSILRTFYMLG
:.:::::::.:::::::::::::::..::..::::::::::::::::.:::.::.::.::
CCDS10 LALEQIDLIHRMCASYSELELVTSAEGLNSSQKLACLIGVEGGHSLDSSLSVLRSFYVLG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE1 VRYLTLTHTCNTPWAESSAKGVHSFYNNISGLTDFGEKVVAEMNRLGMMVDLSHVSDAVA
::::::: ::.:::::::.: : .:.:.::::.:::::: :.::::::.:::..::..
CCDS10 VRYLTLTFTCSTPWAESSTKFRHHMYTNVSGLTSFGEKVVEELNRLGMMIDLSYASDTLI
250 260 270 280 290 300
270 280 290 300 310 320
pF1KE1 RRALEVSQAPVIFSHSAARGVCNSARNVPDDILQLLKKNGGVVMVSLSMGVIQCNPSANV
::.::::::::::::::::.::.. :::::::::::::::.:::.:::::.::: :::
CCDS10 RRVLEVSQAPVIFSHSAARAVCDNLLNVPDDILQLLKKNGGIVMVTLSMGVLQCNLLANV
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE1 STVADHFDHIKAVIGSKFIGIGGDYDGAGKFPQGLEDVSTYPVLIEELLSRGWSEEELQG
::::::::::.:::::.::::::.:::.:.:::::::::::::::::::::.::::::::
CCDS10 STVADHFDHIRAVIGSEFIGIGGNYDGTGRFPQGLEDVSTYPVLIEELLSRSWSEEELQG
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE1 VLRGNLLRVFRQVEKVQEENKWQSPLEDKFPDEQLSSSCHSDLSRLRQRQSLTSGQELTE
::::::::::::::::.::.. :::.: .:: :::.:::: : . : .. :.:.
CCDS10 VLRGNLLRVFRQVEKVREESRAQSPVEAEFPYGQLSTSCHSHL--VPQNGHQATHLEVTK
430 440 450 460 470
450 460 470 480
pF1KE1 IPIHWTAKLPAKWSVSESSPHMAPVLAVVATFPVLILWL
: : ..: : :..::...: :...::.:.. ::
CCDS10 QP---TNRVP--WRSSNASPYLVPGLVAAATIPTFTQWLC
480 490 500 510
>>CCDS10982.1 DPEP1 gene_id:1800|Hs108|chr16 (411 aa)
initn: 1217 init1: 843 opt: 1225 Z-score: 1336.5 bits: 256.5 E(32554): 4e-68
Smith-Waterman score: 1225; 50.7% identity (80.2% similar) in 363 aa overlap (72-428:19-379)
50 60 70 80 90 100
pF1KE1 ALTTLGAPRAHTMPGTYAPSTTLSSPSTQGLQEQARALMRDFPLVDGHNDLPLVLRQVYQ
....:. .::: :..::::::: : ....
CCDS10 MWSGWWLWPLVAVCTADFFRDEAERIMRDSPVIDGHNDLPWQLLDMFN
10 20 30 40
110 120 130 140 150
pF1KE1 KGLQD--VNLRNFSYGQTSLDRLRDGLVGAQFWSAYVPCQTQDRDALRLTLEQIDLIRRM
. ::: .:: ... .:.. .:: :.::.::::.:.::.::..::.: ::::.:...::
CCDS10 NRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRM
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE1 CASYSELEL-VTSAKALNDT---QKLACLIGVEGGHSLDNSLSILRTFYMLGVRYLTLTH
: : : : :::. .. .. :.: :::::::::.:.::..::..:.::.:::::::
CCDS10 CRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTH
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE1 TCNTPWAESSAKGVHSFYNNISGLTDFGEKVVAEMNRLGMMVDLSHVSDAVARRALEVSQ
.::::::.. . . . .::. ::..:: :.::::...::.::: :. . .:..:.
CCDS10 SCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSR
170 180 190 200 210 220
280 290 300 310 320 330
pF1KE1 APVIFSHSAARGVCNSARNVPDDILQLLKKNGGVVMVSLSMGVIQCNPSANVSTVADHFD
::::::::.: .:: : ::::::.:.:.:.. ..:::.. . :.:. .::.: ::::.:
CCDS10 APVIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLD
230 240 250 260 270 280
340 350 360 370 380 390
pF1KE1 HIKAVIGSKFIGIGGDYDGAGKFPQGLEDVSTYPVLIEELLSRGWSEEELQGVLRGNLLR
::: : :.. .:.:::.::. . :.:::::: :: :: ::: :.:.: :..:.: ::::
CCDS10 HIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLR
290 300 310 320 330 340
400 410 420 430 440 450
pF1KE1 VFRQVEKVQEENKWQSPLEDKFPDEQLSSSCHSDLSRLRQRQSLTSGQELTEIPIHWTAK
::. :: : : :.: :. .: .::..::..
CCDS10 VFEAVE--QASNLTQAPEEEPIPLDQLGGSCRTHYGYSSGASSLHRHWGLLLASLAPLVL
350 360 370 380 390 400
460 470 480
pF1KE1 LPAKWSVSESSPHMAPVLAVVATFPVLILWL
CCDS10 CLSLL
410
486 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:04:13 2016 done: Sun Nov 6 14:04:14 2016
Total Scan time: 3.470 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]