Result of FASTA (ccds) for
pFN21AE1935
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1935, 474 aa
1>>>pF1KE1935 474 - 474 aa - 474 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8560+/-0.000945; mu= 15.3898+/- 0.057
mean_var=77.9760+/-15.692, 0's: 0 Z-trim(106.2): 16 B-trim: 177 in 1/49
Lambda= 0.145243
statistics sampled from 8863 (8870) to 8863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.272), width: 16
Scan time: 3.220
The best scores are: opt bits E(32554)
CCDS3550.1 GC gene_id:2638|Hs108|chr4 ( 474) 3171 674.2 8.4e-194
CCDS56332.1 GC gene_id:2638|Hs108|chr4 ( 493) 3171 674.2 8.7e-194
CCDS3555.1 ALB gene_id:213|Hs108|chr4 ( 609) 595 134.4 3.2e-31
>>CCDS3550.1 GC gene_id:2638|Hs108|chr4 (474 aa)
initn: 3171 init1: 3171 opt: 3171 Z-score: 3592.9 bits: 674.2 E(32554): 8.4e-194
Smith-Waterman score: 3171; 99.6% identity (100.0% similar) in 474 aa overlap (1-474:1-474)
10 20 30 40 50 60
pF1KE1 MKRVLVLLLAVAFGHALERGRDYEKNKVCKEFSHLGKEDFTSLSLVLYSRKFPSGTFEQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKRVLVLLLAVAFGHALERGRDYEKNKVCKEFSHLGKEDFTSLSLVLYSRKFPSGTFEQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SQLVKEVVSLTEACCAEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SQLVKEVVSLTEACCAEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LCMAALKHQPQEFPTYVEPTNDEICEAFRKDPKEYANQFMWEYSTNYGQAPLSLLVSYTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LCMAALKHQPQEFPTYVEPTNDEICEAFRKDPKEYANQFMWEYSTNYGQAPLSLLVSYTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SYLSMVGSCCTSASPTVCFLKERLQLKHLSLLTTLSNRVCSQYAAYGEKKSRLSNLIKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SYLSMVGSCCTSASPTVCFLKERLQLKHLSLLTTLSNRVCSQYAAYGEKKSRLSNLIKLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 QKVPTADLEDVLPLAEDITNILSKCCESASEDCMAKELPEHTVKLCDNLSTKNSKFEDCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QKVPTADLEDVLPLAEDITNILSKCCESASEDCMAKELPEHTVKLCDNLSTKNSKFEDCC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QEKTAMDVFVCTYFMPAAQLPELPDVELPTNKDVCDPGNTKVMDKYTFELSRRTHLPEVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QEKTAMDVFVCTYFMPAAQLPELPDVELPTNKDVCDPGNTKVMDKYTFELSRRTHLPEVF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LSKVLEPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LSKVLEPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKK
370 380 390 400 410 420
430 440 450 460 470
pF1KE1 KLAERLKAKLPEATPTELAKLVNKRSDFASNCCSINSPPLYCDSEIDAELKNIL
:::::::::::.::::::::::::.:::::::::::::::::::::::::::::
CCDS35 KLAERLKAKLPDATPTELAKLVNKHSDFASNCCSINSPPLYCDSEIDAELKNIL
430 440 450 460 470
>>CCDS56332.1 GC gene_id:2638|Hs108|chr4 (493 aa)
initn: 3171 init1: 3171 opt: 3171 Z-score: 3592.6 bits: 674.2 E(32554): 8.7e-194
Smith-Waterman score: 3171; 99.6% identity (100.0% similar) in 474 aa overlap (1-474:20-493)
10 20 30 40
pF1KE1 MKRVLVLLLAVAFGHALERGRDYEKNKVCKEFSHLGKEDFT
:::::::::::::::::::::::::::::::::::::::::
CCDS56 MLWSWSEERGGAARLSGRKMKRVLVLLLAVAFGHALERGRDYEKNKVCKEFSHLGKEDFT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 SLSLVLYSRKFPSGTFEQVSQLVKEVVSLTEACCAEGADPDCYDTRTSALSAKSCESNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SLSLVLYSRKFPSGTFEQVSQLVKEVVSLTEACCAEGADPDCYDTRTSALSAKSCESNSP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE1 FPVHPGTAECCTKEGLERKLCMAALKHQPQEFPTYVEPTNDEICEAFRKDPKEYANQFMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FPVHPGTAECCTKEGLERKLCMAALKHQPQEFPTYVEPTNDEICEAFRKDPKEYANQFMW
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE1 EYSTNYGQAPLSLLVSYTKSYLSMVGSCCTSASPTVCFLKERLQLKHLSLLTTLSNRVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EYSTNYGQAPLSLLVSYTKSYLSMVGSCCTSASPTVCFLKERLQLKHLSLLTTLSNRVCS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE1 QYAAYGEKKSRLSNLIKLAQKVPTADLEDVLPLAEDITNILSKCCESASEDCMAKELPEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QYAAYGEKKSRLSNLIKLAQKVPTADLEDVLPLAEDITNILSKCCESASEDCMAKELPEH
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE1 TVKLCDNLSTKNSKFEDCCQEKTAMDVFVCTYFMPAAQLPELPDVELPTNKDVCDPGNTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TVKLCDNLSTKNSKFEDCCQEKTAMDVFVCTYFMPAAQLPELPDVELPTNKDVCDPGNTK
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE1 VMDKYTFELSRRTHLPEVFLSKVLEPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VMDKYTFELSRRTHLPEVFLSKVLEPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFID
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE1 KGQELCADYSENTFTEYKKKLAERLKAKLPEATPTELAKLVNKRSDFASNCCSINSPPLY
::::::::::::::::::::::::::::::.::::::::::::.::::::::::::::::
CCDS56 KGQELCADYSENTFTEYKKKLAERLKAKLPDATPTELAKLVNKHSDFASNCCSINSPPLY
430 440 450 460 470 480
470
pF1KE1 CDSEIDAELKNIL
:::::::::::::
CCDS56 CDSEIDAELKNIL
490
>>CCDS3555.1 ALB gene_id:213|Hs108|chr4 (609 aa)
initn: 424 init1: 302 opt: 595 Z-score: 674.0 bits: 134.4 E(32554): 3.2e-31
Smith-Waterman score: 598; 24.9% identity (58.1% similar) in 470 aa overlap (1-453:1-462)
10 20 30 40 50
pF1KE1 MKRVLVLLLAVAFGHALERG---RDYEKNKVCKEFSHLGKEDFTSLSLVLYSRKFPSGTF
:: : . : :. : :: :: .:..: ..:. ::.:.: .: :. ... . . :
CCDS35 MKWVTFISLLFLFSSAYSRGVFRRDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 EQVSQLVKEVVSLTEACCAEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGL
:. .::.::. ....: :. . .: . . .. : : . .. :.::.:.
CCDS35 EDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ERKLCMAALKHQPQEFPTYVEPTNDEICEAFRKDPKEYANQFMWEYSTNYGQAPLSLLVS
::. :. : . ..: :.: : .: ::. . . . .....: . . :.
CCDS35 ERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 YTKSYLSMVGSCCTSASPTVCFLKERLQLKHLSLLTTLSNRV-CSQYAAYGEKKSRLSNL
..: : . :: .:. ..:.: . .:. . .. ..:. :.. .::. . .
CCDS35 FAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 IKLAQKVPTADLEDVLPLAEDITNILSKCCESASEDCMAKELPEHTVKLCDNLSTKNSKF
.:.:. : :.. .: :. :.:.. ..::.. .: : . . . .:.: .. .::.
CCDS35 ARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLEC-ADDRADLAKYICENQDSISSKL
250 260 270 280 290
300 310 320 330 340 350
pF1KE1 EDCCQEKTAMDVFVCTYFMPAAQLP-ELPDV--ELPTNKDVC-DPGNTK--VMDKYTFEL
..:: :: .. : . ..: .::.. .. .:::: . ...: . . .:
CCDS35 KECC-EKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEY
300 310 320 330 340 350
360 370 380 390 400
pF1KE1 SRRTHLPE---VFLSKVLEPTLKSLGECCDVEDSTTC----FNAKGPLLKKELSSFIDKG
.:: : :. :.: .. . .: .:: . : : :. ::.. : ...: ..
CCDS35 ARR-H-PDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVE-EPQNLIKQN
360 370 380 390 400 410
410 420 430 440 450 460
pF1KE1 QELCADYSENTFTEYKKKLAERLKAKLPEATPTELAKLVNKRSDFASNCCSINSPPLYCD
:: . .: : .. : : :.:... :... . . .:.::
CCDS35 CELFEQLGEYKF---QNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPC
420 430 440 450 460 470
470
pF1KE1 SEIDAELKNIL
CCDS35 AEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFT
480 490 500 510 520 530
474 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:02:11 2016 done: Sun Nov 6 10:02:12 2016
Total Scan time: 3.220 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]