FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1930, 469 aa
  1>>>pF1KE1930 469 - 469 aa - 469 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7237+/-0.00125; mu= -1.3319+/- 0.074
 mean_var=311.9754+/-65.321, 0's: 0 Z-trim(110.0): 23  B-trim: 91 in 2/52
 Lambda= 0.072613
 statistics sampled from 11290 (11299) to 11290 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.347), width:  16
 Scan time:  3.430

The best scores are:                                      opt bits E(32554)
CCDS2806.1 TRAIP gene_id:10293|Hs108|chr3          ( 469) 3069 335.5 7.3e-92


>>CCDS2806.1 TRAIP gene_id:10293|Hs108|chr3               (469 aa)
 initn: 3069 init1: 3069 opt: 3069  Z-score: 1762.7  bits: 335.5 E(32554): 7.3e-92
Smith-Waterman score: 3069; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469)

               10        20        30        40        50        60
pF1KE1 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL
              370       380       390       400       410       420

              430       440       450       460         
pF1KE1 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS
              430       440       450       460         




469 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:47:39 2016 done: Sun Nov  6 17:47:40 2016
 Total Scan time:  3.430 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]