FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1920, 455 aa
  1>>>pF1KE1920 455 - 455 aa - 455 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9434+/-0.000937; mu= 3.1469+/- 0.057
 mean_var=224.9722+/-45.744, 0's: 0 Z-trim(113.4): 26  B-trim: 126 in 2/52
 Lambda= 0.085509
 statistics sampled from 14042 (14061) to 14042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.432), width:  16
 Scan time:  3.320

The best scores are:                                      opt bits E(32554)
CCDS2625.2 SH3BP5 gene_id:9467|Hs108|chr3          ( 455) 2923 373.2 3.2e-103
CCDS43055.1 SH3BP5 gene_id:9467|Hs108|chr3         ( 298) 1929 250.4 1.9e-66
CCDS31126.1 SH3BP5L gene_id:80851|Hs108|chr1       ( 393)  698 98.6 1.2e-20


>>CCDS2625.2 SH3BP5 gene_id:9467|Hs108|chr3               (455 aa)
 initn: 2923 init1: 2923 opt: 2923  Z-score: 1966.7  bits: 373.2 E(32554): 3.2e-103
Smith-Waterman score: 2923; 100.0% identity (100.0% similar) in 455 aa overlap (1-455:1-455)

               10        20        30        40        50        60
pF1KE1 MDAALKRSRSEEPAEILPPARDEEEEEEEGMEQGLEEEEEVDPRIQGELEKLNQSTDDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MDAALKRSRSEEPAEILPPARDEEEEEEEGMEQGLEEEEEVDPRIQGELEKLNQSTDDIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RRETELEDARQKFRSVLVEATVKLDELVKKIGKAVEDSKPYWEARRVARQAQLEAQKATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 RRETELEDARQKFRSVLVEATVKLDELVKKIGKAVEDSKPYWEARRVARQAQLEAQKATQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DFQRATEVLRAAKETISLAEQRLLEDDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 DFQRATEVLRAAKETISLAEQRLLEDDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 KETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEGSSTSVEDLPGSKPEPDAISVASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 GEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEGSSTSVEDLPGSKPEPDAISVASE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 AFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 MFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSST
              370       380       390       400       410       420

              430       440       450     
pF1KE1 SPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG
       :::::::::::::::::::::::::::::::::::
CCDS26 SPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG
              430       440       450     

>>CCDS43055.1 SH3BP5 gene_id:9467|Hs108|chr3              (298 aa)
 initn: 1929 init1: 1929 opt: 1929  Z-score: 1306.6  bits: 250.4 E(32554): 1.9e-66
Smith-Waterman score: 1929; 100.0% identity (100.0% similar) in 298 aa overlap (158-455:1-298)

       130       140       150       160       170       180       
pF1KE1 VLRAAKETISLAEQRLLEDDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVHKETAARY
                                     ::::::::::::::::::::::::::::::
CCDS43                               MLNHATQRVMEAEQTKTRSELVHKETAARY
                                             10        20        30

       190       200       210       220       230       240       
pF1KE1 NAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAKGEYKMAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAKGEYKMAL
               40        50        60        70        80        90

       250       260       270       280       290       300       
pF1KE1 KNLEMISDEIHERRRSSAMGPRGCGVGAEGSSTSVEDLPGSKPEPDAISVASEAFEDDSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KNLEMISDEIHERRRSSAMGPRGCGVGAEGSSTSVEDLPGSKPEPDAISVASEAFEDDSC
              100       110       120       130       140       150

       310       320       330       340       350       360       
pF1KE1 SNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMMFPVLGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMMFPVLGP
              160       170       180       190       200       210

       370       380       390       400       410       420       
pF1KE1 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL
              220       230       240       250       260       270

       430       440       450     
pF1KE1 ENRMKQLSLQCSKGRDGIIADIKMVQIG
       ::::::::::::::::::::::::::::
CCDS43 ENRMKQLSLQCSKGRDGIIADIKMVQIG
              280       290        

>>CCDS31126.1 SH3BP5L gene_id:80851|Hs108|chr1            (393 aa)
 initn: 386 init1: 355 opt: 698  Z-score: 484.2  bits: 98.6 E(32554): 1.2e-20
Smith-Waterman score: 698; 45.1% identity (76.3% similar) in 253 aa overlap (37-284:52-303)

         10        20        30        40        50        60      
pF1KE1 RSRSEEPAEILPPARDEEEEEEEGMEQGLEEEEEVDPRIQGELEKLNQSTDDINRRETEL
                                     ::::.::::: :::.:::....::. : .:
CCDS31 VVEDEVPRSPVAEEPGGGGSSSSEAKLSPREEEELDPRIQEELEHLNQASEEINQVELQL
              30        40        50        60        70        80 

         70        80        90       100       110       120      
pF1KE1 EDARQKFRSVLVEATVKLDELVKKIGKAVEDSKPYWEARRVARQAQLEAQKATQDFQRAT
       ..::  .: .: :.. ::.   ...:. .: ..::.::::.:..:: :.:::.  ..::.
CCDS31 DEARTTYRRILQESARKLNTQGSHLGSCIEKARPYYEARRLAKEAQQETQKAALRYERAV
              90       100       110       120       130       140 

        130       140       150       160       170       180      
pF1KE1 EVLRAAKETISLAEQRLLEDDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVHKETAAR
        .  ::.: . .::: .. : : ..: .::::::::: .: :::. . :.:  :....  
CCDS31 SMHNAAREMVFVAEQGVMAD-KNRLDPTWQEMLNHATCKVNEAEEERLRGEREHQRVTRL
             150       160        170       180       190       200

        190       200       210       220       230       240      
pF1KE1 YNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAKGEYKMA
        . : .:.. :.: :.:::.::.:::::::..   ::. :  : .:. ... :: .:..:
CCDS31 CQQAEARVQALQKTLRRAIGKSRPYFELKAQFSQILEEHKAKVTELEQQVAQAKTRYSVA
              210       220       230       240       250       260

        250       260            270       280       290       300 
pF1KE1 LKNLEMISDEIHERRRSS----AMGPR-GCGVGAEGSSTSVEDLPGSKPEPDAISVASEA
       :.:::.::..:: :::..     .::: .  ::::..  ..::                 
CCDS31 LRNLEQISEQIHARRRGGLPPHPLGPRRSSPVGAEAGPEDMEDGDSGIEGAEGAGLEEGS
              270       280       290       300       310       320

             310       320       330       340       350       360 
pF1KE1 FEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMM
                                                                   
CCDS31 SLGPGPAPDTDTLSLLSLRTVASDLQKCDSVEHLRGLSDHVSLDGQELGTRSGGRRGSDG
              330       340       350       360       370       380




455 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:10:08 2016 done: Sun Nov  6 21:10:09 2016
 Total Scan time:  3.320 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]