Result of FASTA (omim) for
pFN21AE1910
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1910, 444 aa
1>>>pF1KE1910 444 - 444 aa - 444 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3344+/-0.000382; mu= 17.6382+/- 0.024
mean_var=69.9508+/-13.575, 0's: 0 Z-trim(112.6): 66 B-trim: 103 in 1/53
Lambda= 0.153348
statistics sampled from 21462 (21530) to 21462 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.252), width: 16
Scan time: 7.760
The best scores are: opt bits E(85289)
NP_001276058 (OMIM: 602662) tubulin beta-4A chain ( 444) 2983 669.3 5.8e-192
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 2983 669.3 5.8e-192
NP_001276056 (OMIM: 602662) tubulin beta-4A chain ( 489) 2983 669.3 6.2e-192
NP_001276052 (OMIM: 602662) tubulin beta-4A chain ( 495) 2983 669.3 6.3e-192
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 2944 660.6 2.3e-189
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 2893 649.3 5.7e-186
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 2885 647.6 1.9e-185
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 2866 643.4 3.6e-184
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 2787 625.9 6.6e-179
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 2776 623.5 3.5e-178
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 2776 623.5 3.5e-178
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 2771 622.4 7.8e-178
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 2749 617.5 2.2e-176
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 2518 566.4 4.9e-161
NP_001276059 (OMIM: 602662) tubulin beta-4A chain ( 372) 2487 559.5 5.4e-159
NP_001276060 (OMIM: 602662) tubulin beta-4A chain ( 372) 2487 559.5 5.4e-159
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 2424 545.6 9.9e-155
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 2418 544.2 2.1e-154
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 2418 544.2 2.1e-154
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 2361 531.6 1.3e-150
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 2351 529.4 6.2e-150
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 2322 523.0 5.2e-148
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 2273 512.2 1.1e-144
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 2253 507.7 2e-143
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 2222 500.9 2.4e-141
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 2213 498.9 1e-140
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2044 461.4 1.6e-129
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2044 461.4 1.6e-129
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1864 421.6 1.4e-117
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1864 421.6 1.4e-117
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 1671 378.9 9.7e-105
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 1290 294.7 3.3e-79
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 1282 292.9 1.1e-78
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 1282 292.9 1.1e-78
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 1261 288.3 2.8e-77
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain ( 450) 1253 286.5 9.5e-77
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 1238 283.2 9.5e-76
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 1212 277.4 5e-74
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 1178 269.9 8.8e-72
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 1079 248.0 3.2e-65
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 1003 231.2 4.3e-60
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 993 229.0 2e-59
NP_001280142 (OMIM: 156610,191130,615771) tubulin ( 242) 824 191.4 2.1e-48
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295) 770 179.6 9.9e-45
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 615 145.4 3e-34
NP_001290454 (OMIM: 615103) tubulin beta-6 chain i ( 104) 557 132.2 6.5e-31
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475) 519 124.1 7.6e-28
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 510 122.0 2.1e-27
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 510 122.0 2.1e-27
XP_016879945 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 475 114.3 4.1e-25
>>NP_001276058 (OMIM: 602662) tubulin beta-4A chain isof (444 aa)
initn: 2983 init1: 2983 opt: 2983 Z-score: 3567.4 bits: 669.3 E(85289): 5.8e-192
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KE1 EYQQYQDATAEEGEFEEEAEEEVA
::::::::::::::::::::::::
NP_001 EYQQYQDATAEEGEFEEEAEEEVA
430 440
>>NP_006078 (OMIM: 602662) tubulin beta-4A chain isoform (444 aa)
initn: 2983 init1: 2983 opt: 2983 Z-score: 3567.4 bits: 669.3 E(85289): 5.8e-192
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KE1 EYQQYQDATAEEGEFEEEAEEEVA
::::::::::::::::::::::::
NP_006 EYQQYQDATAEEGEFEEEAEEEVA
430 440
>>NP_001276056 (OMIM: 602662) tubulin beta-4A chain isof (489 aa)
initn: 2983 init1: 2983 opt: 2983 Z-score: 3566.8 bits: 669.3 E(85289): 6.2e-192
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:46-489)
10 20 30
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGI
::::::::::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE1 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
200 210 220 230 240 250
220 230 240 250 260 270
pF1KE1 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
260 270 280 290 300 310
280 290 300 310 320 330
pF1KE1 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
320 330 340 350 360 370
340 350 360 370 380 390
pF1KE1 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
380 390 400 410 420 430
400 410 420 430 440
pF1KE1 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGEFEEEAEEEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGEFEEEAEEEVA
440 450 460 470 480
>>NP_001276052 (OMIM: 602662) tubulin beta-4A chain isof (495 aa)
initn: 2983 init1: 2983 opt: 2983 Z-score: 3566.7 bits: 669.3 E(85289): 6.3e-192
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:52-495)
10 20 30
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGI
::::::::::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE1 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE1 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE1 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE1 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
270 280 290 300 310 320
280 290 300 310 320 330
pF1KE1 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
330 340 350 360 370 380
340 350 360 370 380 390
pF1KE1 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
390 400 410 420 430 440
400 410 420 430 440
pF1KE1 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGEFEEEAEEEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGEFEEEAEEEVA
450 460 470 480 490
>>NP_006079 (OMIM: 602660) tubulin beta-4B chain [Homo s (445 aa)
initn: 2893 init1: 2893 opt: 2944 Z-score: 3520.7 bits: 660.6 E(85289): 2.3e-189
Smith-Waterman score: 2944; 98.4% identity (99.8% similar) in 445 aa overlap (1-444:1-445)
10 20 30 40 50 60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KE1 EYQQYQDATAEE-GEFEEEAEEEVA
:::::::::::: ::::::::::::
NP_006 EYQQYQDATAEEEGEFEEEAEEEVA
430 440
>>NP_821133 (OMIM: 156610,191130,615771) tubulin beta ch (444 aa)
initn: 2909 init1: 2872 opt: 2893 Z-score: 3459.8 bits: 649.3 E(85289): 5.7e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-442:1-443)
10 20 30 40 50 60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
::::::.:::::::::::::::::::::::::::::::::::::.::.:::::::::.::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_821 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KE1 EYQQYQDATAEEGE-FEEEAEEEVA
:::::::::::: : : ::::::
NP_821 EYQQYQDATAEEEEDFGEEAEEEA
430 440
>>NP_821080 (OMIM: 610031,612850) tubulin beta-2B chain (445 aa)
initn: 2892 init1: 2860 opt: 2885 Z-score: 3450.2 bits: 647.6 E(85289): 1.9e-185
Smith-Waterman score: 2885; 95.5% identity (99.1% similar) in 445 aa overlap (1-444:1-445)
10 20 30 40 50 60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
::::::.:::::::::::::::::::::::::::.:::::::::::::::::::::..::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
:::.::::::::::::::::::::::::::::::::::.::::::::::.::::::::::
NP_821 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::.:::::::::::::::.::.:::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KE1 EYQQYQDATAEE-GEFEEEAEEEVA
::::::::::.: :::::: :. :
NP_821 EYQQYQDATADEQGEFEEEEGEDEA
430 440
>>NP_001060 (OMIM: 615101,615763) tubulin beta-2A chain (445 aa)
initn: 2873 init1: 2841 opt: 2866 Z-score: 3427.5 bits: 643.4 E(85289): 3.6e-184
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-444:1-445)
10 20 30 40 50 60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
::::::.:::::::::::::::::::::::::::.:::::::::::::::::::.:..::
NP_001 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_001 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
:::.::::::::::::::::::::::::::::::::::.::::::::::.::::::::::
NP_001 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::.:::::::::::::::.::.:::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KE1 EYQQYQDATAEE-GEFEEEAEEEVA
::::::::::.: :::::: :. :
NP_001 EYQQYQDATADEQGEFEEEEGEDEA
430 440
>>NP_006077 (OMIM: 600638,602661,614039) tubulin beta-3 (450 aa)
initn: 2768 init1: 2768 opt: 2787 Z-score: 3333.0 bits: 625.9 E(85289): 6.6e-179
Smith-Waterman score: 2787; 92.3% identity (98.2% similar) in 443 aa overlap (1-442:1-443)
10 20 30 40 50 60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
::::::.:::::::::::::::::::::::::.:.: ::::::::::.::::::.. .::
NP_006 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
:::.::::::::::::::: ::..::::::.:::::::::::::::::::::::.:::::
NP_006 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.:::.:::::::::::::::::::::
NP_006 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_006 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::.::::::::::::::::..:::::::::::::::::.:::::::::
NP_006 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KE1 EYQQYQDATAEE-GEFEEEAEEEVA
:::::::::::: ::. :. :::
NP_006 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
430 440 450
>>NP_001290453 (OMIM: 615103) tubulin beta-6 chain isofo (446 aa)
initn: 2772 init1: 2772 opt: 2776 Z-score: 3319.9 bits: 623.5 E(85289): 3.5e-178
Smith-Waterman score: 2776; 92.3% identity (97.5% similar) in 443 aa overlap (1-441:1-443)
10 20 30 40 50 60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
::::::.::::::::::.::::::::::::::.: : ::: ::::::::::::... .::
NP_001 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
:::.:::::::::::::::::::.::::::.:::.:::::::::::::::::::::::::
NP_001 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
::: : :::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_001 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::.:::: :::::::::::..:::::::::::::::::.:::::::::
NP_001 AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::.::::::::::::::::::::.:::::::::::.::::::::::::::::::::::
NP_001 LKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KE1 EYQQYQDATAEEGE--FEEEAEEEVA
::::::::::..:: ::.: ::
NP_001 EYQQYQDATANDGEEAFEDEEEEIDG
430 440
444 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:30:54 2016 done: Sun Nov 6 13:30:55 2016
Total Scan time: 7.760 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]