Result of FASTA (ccds) for
pFN21AE1895
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1895, 417 aa
1>>>pF1KE1895 417 - 417 aa - 417 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3618+/-0.000849; mu= 10.5726+/- 0.051
mean_var=200.7861+/-38.695, 0's: 0 Z-trim(114.7): 48 B-trim: 8 in 1/53
Lambda= 0.090512
statistics sampled from 15247 (15293) to 15247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.47), width: 16
Scan time: 3.400
The best scores are: opt bits E(32554)
CCDS71.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 417) 3046 409.9 2.3e-114
CCDS74.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 372) 2314 314.3 1.3e-85
CCDS73.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 380) 1531 212.0 7.7e-55
CCDS72.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 426) 1512 209.6 4.6e-54
CCDS75.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 234) 1260 176.4 2.5e-44
>>CCDS71.1 TNFRSF25 gene_id:8718|Hs108|chr1 (417 aa)
initn: 3046 init1: 3046 opt: 3046 Z-score: 2166.7 bits: 409.9 E(32554): 2.3e-114
Smith-Waterman score: 3046; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)
10 20 30 40 50 60
pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
310 320 330 340 350 360
370 380 390 400 410
pF1KE1 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
370 380 390 400 410
>>CCDS74.1 TNFRSF25 gene_id:8718|Hs108|chr1 (372 aa)
initn: 2674 init1: 2301 opt: 2314 Z-score: 1650.7 bits: 314.3 E(32554): 1.3e-85
Smith-Waterman score: 2588; 89.2% identity (89.2% similar) in 417 aa overlap (1-417:1-372)
10 20 30 40 50 60
pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA-------
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
::::::::::::::::::::::
CCDS74 --------------------------------------ASQVALENCSAVADTRCGCKPG
60 70
130 140 150 160 170 180
pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
80 90 100 110 120 130
190 200 210 220 230 240
pF1KE1 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE1 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE1 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
260 270 280 290 300 310
370 380 390 400 410
pF1KE1 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
320 330 340 350 360 370
>>CCDS73.1 TNFRSF25 gene_id:8718|Hs108|chr1 (380 aa)
initn: 2766 init1: 1531 opt: 1531 Z-score: 1098.0 bits: 212.0 E(32554): 7.7e-55
Smith-Waterman score: 2696; 90.9% identity (91.1% similar) in 417 aa overlap (1-417:1-380)
10 20 30 40 50 60
pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG
::::::::::::::::::: .:::
CCDS73 TSTLGSCPERCAAVCGWRQ-------------------------------------NEAG
190 200
250 260 270 280 290 300
pF1KE1 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE1 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
270 280 290 300 310 320
370 380 390 400 410
pF1KE1 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
330 340 350 360 370 380
>>CCDS72.1 TNFRSF25 gene_id:8718|Hs108|chr1 (426 aa)
initn: 2884 init1: 1509 opt: 1512 Z-score: 1084.0 bits: 209.6 E(32554): 4.6e-54
Smith-Waterman score: 2873; 94.6% identity (96.0% similar) in 426 aa overlap (1-417:1-426)
10 20 30 40 50 60
pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 TS--TLGSCPERCA------AVCGWR-QMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHK
: .:.. : . .: : : .:::::::::::::::::::::::::::::::
CCDS72 TPPPSLAGAPWGAVQSAVPLSVAGGRVGVFWVQVLLAGLVVPLLLGATLTYTYRHCWPHK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 PLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE1 RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS
370 380 390 400 410 420
pF1KE1 RLQRGP
::::::
CCDS72 RLQRGP
>>CCDS75.1 TNFRSF25 gene_id:8718|Hs108|chr1 (234 aa)
initn: 1260 init1: 1260 opt: 1260 Z-score: 909.3 bits: 176.4 E(32554): 2.5e-44
Smith-Waterman score: 1266; 56.1% identity (56.1% similar) in 417 aa overlap (1-417:1-234)
10 20 30 40 50 60
pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA-------
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
CCDS75 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
CCDS75 ------------------------------------------------------------
190 200 210 220 230 240
pF1KE1 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG
::::
CCDS75 --------------------------------------------------------DEAG
250 260 270 280 290 300
pF1KE1 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
60 70 80 90 100 110
310 320 330 340 350 360
pF1KE1 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
120 130 140 150 160 170
370 380 390 400 410
pF1KE1 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
180 190 200 210 220 230
417 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 19:32:59 2016 done: Sun Nov 6 19:32:59 2016
Total Scan time: 3.400 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]