Result of FASTA (ccds) for
pFN21AE1893
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1893, 422 aa
1>>>pF1KE1893 422 - 422 aa - 422 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0373+/-0.00105; mu= 13.1202+/- 0.063
mean_var=68.7748+/-13.139, 0's: 0 Z-trim(102.5): 24 B-trim: 0 in 0/51
Lambda= 0.154653
statistics sampled from 6951 (6959) to 6951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.214), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS11272.1 PSMD11 gene_id:5717|Hs108|chr17 ( 422) 2637 597.8 6.5e-171
CCDS32235.1 COPS2 gene_id:9318|Hs108|chr15 ( 443) 395 97.6 2.6e-20
CCDS45257.1 COPS2 gene_id:9318|Hs108|chr15 ( 450) 386 95.6 1.1e-19
>>CCDS11272.1 PSMD11 gene_id:5717|Hs108|chr17 (422 aa)
initn: 2637 init1: 2637 opt: 2637 Z-score: 3182.0 bits: 597.8 E(32554): 6.5e-171
Smith-Waterman score: 2637; 100.0% identity (100.0% similar) in 422 aa overlap (1-422:1-422)
10 20 30 40 50 60
pF1KE1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKK
370 380 390 400 410 420
pF1KE1 LT
::
CCDS11 LT
>>CCDS32235.1 COPS2 gene_id:9318|Hs108|chr15 (443 aa)
initn: 302 init1: 229 opt: 395 Z-score: 478.2 bits: 97.6 E(32554): 2.6e-20
Smith-Waterman score: 395; 26.0% identity (57.9% similar) in 385 aa overlap (8-380:35-404)
10 20 30
pF1KE1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQE
.. ...: : .:... ...... . :
CCDS32 EDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELE-GE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 NDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLF-
. : . .. .: : .: . . :: :.: ..... . . . :.:: .
CCDS32 KGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIR---SAVTRNYSEKSINSILDYIS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 LDMEAATGQEV-ELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR
. . :: : :: .. ::... : ...: .::.. ..: . .. :: .
CCDS32 TSKQMDLLQEFYETTLEALKDAKNDRLWF---KTNTKLGKLYLEREEYGKLQKILRQLHQ
130 140 150 160 170
160 170 180 190 200
pF1KE1 ELKKMDDK------ALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP-PKLQA
. : . . :.:. :: . : : .: : .: .. .:: : : ...
CCDS32 SCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAI--PHPLIMG
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE1 TLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNT---PE
.. .: .: .: ... :.. :.:::..:: ::. : :::..: ...... :
CCDS32 VIRECGGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPF
240 250 260 270 280 290
270 280 290 300 310 320
pF1KE1 DVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAK
: : : . :. ...: .: ....::: : .... :::.: :. .
CCDS32 DSQEAKPYK-----NDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEE
300 310 320 330 340
330 340 350 360 370 380
pF1KE1 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL
: :. : ::..:.:..:..: ::. .... :::: : : :::. .:: .::
CCDS32 LLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLL
350 360 370 380 390 400
390 400 410 420
pF1KE1 IIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT
CCDS32 ELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA
410 420 430 440
>>CCDS45257.1 COPS2 gene_id:9318|Hs108|chr15 (450 aa)
initn: 302 init1: 229 opt: 386 Z-score: 467.2 bits: 95.6 E(32554): 1.1e-19
Smith-Waterman score: 396; 26.5% identity (57.7% similar) in 388 aa overlap (4-380:49-411)
10 20 30
pF1KE1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKR
::. ::.. : . : .. :....:
CCDS45 EYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 DIQ-ENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSL
... : : .. .: . . : .... . ....: :. : :: .. : .
CCDS45 NFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI-----STSKQNSDFLCQ--
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 LDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQ
.::. .. : :: .. ::... : ...: .::.. ..: . .. :
CCDS45 MDLLQEF-------YETTLEALKDAKNDRLWF---KTNTKLGKLYLEREEYGKLQKILRQ
140 150 160 170 180
160 170 180 190 200
pF1KE1 LLRELKKMDDK------ALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP-PK
: . . : . . :.:. :: . : : .: : .: .. .:: : :
CCDS45 LHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAI--PHPL
190 200 210 220 230
210 220 230 240 250 260
pF1KE1 LQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNT--
..... .: .: .: ... :.. :.:::..:: ::. : :::..: ......
CCDS45 IMGVIRECGGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI
240 250 260 270 280 290
270 280 290 300 310 320
pF1KE1 -PEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTH
: : : : . :. ...: .: ....::: : .... :::.: :
CCDS45 NPFDSQEAKPYK-----NDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREH
300 310 320 330 340 350
330 340 350 360 370 380
pF1KE1 LAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGE
. .: :. : ::..:.:..:..: ::. .... :::: : : :::. .:: .::
CCDS45 IEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVN
360 370 380 390 400 410
390 400 410 420
pF1KE1 GVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT
CCDS45 QLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA
420 430 440 450
422 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:53:32 2016 done: Sun Nov 6 13:53:33 2016
Total Scan time: 2.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]